Detailed information of deep learning profile BP000445.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in psoas muscle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000445.1
Cell line/tissue: psoas muscle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR984IUE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.01 -0.00 -0.00 0.03 -0.00 -0.01 0.09 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.19 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.10 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.07 0.05 0.18 0.11 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 3892 3537 3423 4697 6220 4395 3393 4024 3341 3807 4259 4446 4515 4539 4041 2717 3977 4823 1946 711 11129 1351 2899 14264 312 6664 1408 298 539 2850 7068 1846 2677 6185 3128 5121 3841 4497 4008 3764 4512 5442 3685 4412 4586 5004 4597 4504 4572 4542 ]
C [ 4461 3434 4603 5654 3854 3683 3277 4464 7141 6203 5478 4957 4817 4362 4753 5906 3865 2254 13355 16835 1123 9113 7014 667 89 198 900 128 812 12729 1093 8864 5820 4322 3824 3579 3421 4846 5810 6622 5626 3940 4939 4320 4349 4213 4328 4506 4586 4660 ]
G [ 4572 6070 6006 3595 4278 4490 4037 4245 3157 3452 4116 4455 4195 3826 4564 2997 5919 7637 1476 254 2912 6853 1715 1850 17451 10920 9675 17332 15166 764 8727 5365 2097 5382 4889 3972 7506 4967 4552 3067 3292 4825 5001 5029 4815 4187 4330 4944 4882 4713 ]
T [ 5083 4967 3976 4062 3656 5440 7301 5275 4369 4546 4155 4150 4481 5281 4650 6388 4247 3294 1231 208 2844 691 6380 1227 156 226 6025 250 1491 1665 1120 1933 7414 2119 6167 5336 3240 3698 3638 4555 4578 3801 4383 4247 4258 4604 4753 4054 3968 4093 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.03 -0.02 0.02 -0.01 -0.04 0.04 -0.03 -0.02 0.10 -0.05 0.06 -0.07 -0.06 -0.06 -0.01 0.03 -0.02 -0.02 0.03 -0.02 0.02 -0.00 0.01 ]
C [ 0.01 0.02 0.06 0.04 -0.02 0.13 0.20 -0.04 0.12 0.06 -0.00 -0.03 -0.08 -0.00 -0.05 -0.04 0.14 -0.02 0.07 0.05 0.03 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.01 -0.00 0.04 0.06 -0.03 -0.03 0.08 0.05 -0.02 0.02 0.19 0.14 0.10 0.18 0.13 -0.03 0.14 0.05 -0.01 0.03 0.02 -0.00 0.04 0.01 ]
T [ 0.01 0.01 0.03 -0.00 -0.01 -0.04 -0.09 -0.03 -0.06 0.06 -0.04 -0.06 -0.09 0.03 -0.04 0.01 -0.03 -0.07 -0.02 0.04 -0.05 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2264

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 115

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 46

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000131.1 CTCF ENCSR066GBX right atrium auricular region Homo sapiens MA0139.2
BP000132.1 CTCF ENCSR068DJS middle frontal area 46 Homo sapiens MA0139.2
BP000133.1 CTCF ENCSR068HEE left ventricle myocardium inferior Homo sapiens MA0139.2
BP000134.1 CTCF ENCSR071XWO gastrocnemius medialis Homo sapiens MA0139.2
BP000135.1 CTCF ENCSR072EUE OCI-LY1 Homo sapiens MA0139.2
BP000136.1 CTCF ENCSR073BPG middle frontal area 46 Homo sapiens MA0139.2
BP000137.1 CTCF ENCSR073TPC esophagus muscularis mucosa Homo sapiens MA0139.2
BP000138.1 CTCF ENCSR074SFL esophagus muscularis mucosa Homo sapiens MA0139.2
BP000139.1 CTCF ENCSR075NRV B cell Homo sapiens MA0139.2
BP000140.1 CTCF ENCSR079YAP tibial artery Homo sapiens MA0139.2
Showing 10 profiles of page 14 from 45 pages