Detailed information of deep learning profile BP000136.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000136.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR073BPG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.18 -0.00 0.07 0.02 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.10 -0.00 0.03 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.07 0.06 0.18 0.12 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4623 4219 4046 5495 7115 5171 4035 4768 4039 4379 5134 5204 5329 5468 4725 3068 4606 5656 2134 813 13481 1547 3479 16663 317 8100 1279 383 615 3236 8313 1996 3008 7438 3701 6033 4588 5293 4784 4552 5467 6610 4383 5339 5639 6002 5560 5397 5451 5340 ]
C [ 4822 3825 5142 6191 4297 4064 3511 5018 7913 7002 6219 5598 5271 4684 5143 6683 4422 2396 15329 19307 1151 11224 7456 597 77 172 757 127 953 14710 1221 10471 6759 4837 4175 3790 3693 5429 6604 7660 6459 4261 5606 4763 4710 4546 4727 4891 5188 5183 ]
G [ 5150 6793 6620 3973 4804 4866 4570 4716 3489 3822 4491 4926 4743 4288 5253 3300 6656 8815 1601 292 3126 7157 1602 1973 20107 12184 11651 19870 17340 854 9943 5870 2131 5906 5302 4445 8539 5499 5178 3138 3351 5421 5552 5589 5318 4636 4678 5579 5385 5405 ]
T [ 6083 5841 4870 5019 4462 6577 8562 6176 5237 5475 4834 4950 5335 6238 5557 7627 4994 3811 1614 266 2920 750 8141 1445 177 222 6991 298 1770 1878 1201 2341 8780 2497 7500 6410 3858 4457 4112 5328 5401 4386 5137 4987 5011 5494 5713 4811 4654 4750 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 0.00 -0.02 -0.02 0.02 -0.00 -0.03 0.04 -0.03 -0.02 0.10 -0.04 0.06 -0.07 -0.05 -0.06 -0.01 0.02 -0.03 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.03 0.02 0.01 0.03 0.06 0.05 -0.01 0.13 0.19 -0.02 0.14 0.07 0.01 -0.01 -0.05 0.01 -0.03 -0.02 0.14 -0.02 0.07 0.05 0.04 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.02 0.02 0.01 0.05 0.07 -0.02 -0.02 0.09 0.06 -0.01 0.03 0.19 0.14 0.12 0.19 0.14 -0.02 0.15 0.05 -0.00 0.03 0.02 0.00 0.04 0.02 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.04 -0.08 -0.03 -0.06 0.07 -0.03 -0.04 -0.08 0.03 -0.04 0.01 -0.03 -0.07 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 909

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 489

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 330

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 261

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 180

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 101

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages