Detailed information of deep learning profile BP000006.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in mammary epithelial cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000006.1
Cell line/tissue: mammary epithelial cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000ALV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.09 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.20 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.10 -0.00 0.03 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.02 -0.00 0.00 0.20 0.08 0.05 0.18 0.12 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4396 3843 3644 5236 6522 4782 3645 4402 3659 4109 4577 4782 4887 4863 4368 3010 4308 5140 1918 496 12078 1444 3136 15059 281 7001 1588 276 490 2916 7438 2009 2748 6557 3423 5510 4142 4800 4308 4028 4860 5939 4064 4912 5143 5354 5045 4938 4833 4873 ]
C [ 4062 3252 4599 5379 3753 3599 3096 4341 7127 5967 5489 5002 4699 4247 4782 5812 3876 2203 14045 17672 1035 9568 6983 422 56 111 569 54 539 13141 1119 9263 5763 4375 3645 3467 3373 4884 5644 6665 5535 3808 4901 4191 4070 4123 4237 4312 4612 4447 ]
G [ 4499 6115 5913 3347 4217 4079 3934 4088 2941 3264 4009 4169 3994 3723 4307 2823 5777 7468 1259 182 2209 6792 1494 1771 18023 11198 9634 18011 15966 611 8711 5216 1818 5339 4696 3787 7351 4777 4639 3051 3189 4762 4863 4821 4677 4106 4172 4881 4762 4691 ]
T [ 5560 5307 4361 4555 4025 6057 7842 5686 4790 5177 4442 4564 4937 5684 5060 6872 4556 3706 1295 167 3195 713 6904 1265 157 207 6726 176 1522 1849 1249 2029 8188 2246 6753 5753 3651 4056 3926 4773 4933 4008 4689 4593 4627 4934 5063 4386 4310 4506 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.02 -0.05 0.04 -0.04 -0.03 0.10 -0.07 0.04 -0.07 -0.06 -0.05 -0.02 0.03 -0.03 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.03 0.02 0.02 0.03 0.06 0.04 -0.01 0.13 0.20 -0.03 0.12 0.06 -0.03 -0.03 -0.08 0.00 -0.04 -0.04 0.14 -0.02 0.07 0.04 0.03 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.01 0.02 -0.00 0.05 0.07 -0.03 -0.03 0.08 0.06 -0.03 0.03 0.20 0.14 0.11 0.19 0.14 -0.02 0.14 0.05 -0.01 0.03 0.03 0.00 0.04 0.01 ]
T [ 0.00 0.01 0.01 0.01 0.02 -0.01 -0.02 -0.05 -0.09 -0.03 -0.07 0.06 -0.05 -0.06 -0.08 0.02 -0.06 -0.00 -0.02 -0.07 -0.02 0.03 -0.05 0.03 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3996

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 363

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages