Detailed information of deep learning profile BP000445.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in psoas muscle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000445.1
Cell line/tissue: psoas muscle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR984IUE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.11 0.18 0.05 0.07 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.10 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.19 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.09 -0.01 -0.00 0.03 -0.00 -0.00 0.01 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4093 3968 4054 4753 4604 4258 4247 4383 3801 4578 4555 3638 3698 3240 5336 6167 2119 7414 1933 1120 1665 1491 250 6025 226 156 1227 6380 691 2844 208 1231 3294 4247 6388 4650 5281 4481 4150 4155 4546 4369 5275 7301 5440 3656 4062 3976 4967 5083 ]
C [ 4713 4882 4944 4330 4187 4815 5029 5001 4825 3292 3067 4552 4967 7506 3972 4889 5382 2097 5365 8727 764 15166 17332 9675 10920 17451 1850 1715 6853 2912 254 1476 7637 5919 2997 4564 3826 4195 4455 4116 3452 3157 4245 4037 4490 4278 3595 6006 6070 4572 ]
G [ 4660 4586 4506 4328 4213 4349 4320 4939 3940 5626 6622 5810 4846 3421 3579 3824 4322 5820 8864 1093 12729 812 128 900 198 89 667 7014 9113 1123 16835 13355 2254 3865 5906 4753 4362 4817 4957 5478 6203 7141 4464 3277 3683 3854 5654 4603 3434 4461 ]
T [ 4542 4572 4504 4597 5004 4586 4412 3685 5442 4512 3764 4008 4497 3841 5121 3128 6185 2677 1846 7068 2850 539 298 1408 6664 312 14264 2899 1351 11129 711 1946 4823 3977 2717 4041 4539 4515 4446 4259 3807 3341 4024 3393 4395 6220 4697 3423 3537 3892 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.05 0.04 -0.02 -0.07 -0.03 0.01 -0.04 0.03 -0.09 -0.06 -0.04 0.06 -0.06 -0.03 -0.09 -0.04 -0.01 -0.00 0.03 0.01 0.01 ]
C [ 0.01 0.04 -0.00 0.02 0.03 -0.01 0.05 0.14 -0.03 0.13 0.18 0.10 0.14 0.19 0.02 -0.02 0.05 0.08 -0.03 -0.03 0.06 0.04 -0.00 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.03 0.05 0.07 -0.02 0.14 -0.04 -0.05 -0.00 -0.08 -0.03 -0.00 0.06 0.12 -0.04 0.20 0.13 -0.02 0.04 0.06 0.02 0.01 ]
T [ 0.01 -0.00 0.02 -0.02 0.03 -0.02 -0.02 0.03 -0.01 -0.06 -0.06 -0.07 0.06 -0.05 0.10 -0.02 -0.03 0.04 -0.04 -0.01 0.02 -0.02 -0.03 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2264

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 115

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 46

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages