Detailed information of deep learning profile BP000133.1

  1. Home
  2. Deep Learning Profile > BP000133.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in left ventricle myocardium inferior using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000133.1
Cell line/tissue: left ventricle myocardium inferior
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR068HEE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.04 -0.00 0.09 0.14 0.05 0.07 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 -0.00 0.17 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.07 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4489 4356 4410 4803 4746 4576 4485 4638 4179 4732 4768 4008 4140 3746 5428 6313 2891 7198 2760 1763 2196 1884 760 5434 404 239 1566 6885 682 3441 198 1234 3597 4522 6542 4843 5688 4916 4423 4518 4802 4599 5546 7608 5567 3904 4335 4149 5352 5361 ]
C [ 5078 5280 5232 4825 4798 5175 5298 5357 5222 4045 3735 5059 5344 7362 4570 5215 5713 2858 5486 8812 1688 14326 17303 10861 12522 18585 2334 1784 7098 3039 254 1647 8073 6053 3091 4772 4106 4547 4752 4404 3746 3344 4659 4386 4853 4670 3885 6457 6395 4858 ]
G [ 4965 4950 4832 4764 4750 4647 4702 5181 4451 5729 6534 5926 5147 4037 4127 4322 4653 5906 8708 2248 11565 1930 565 1183 329 159 615 7626 10097 1269 18247 14453 2583 4475 6758 5553 4721 5198 5391 5815 6930 7832 4811 3699 4254 4227 6188 5042 3857 4824 ]
T [ 4844 4790 4902 4984 5082 4978 4891 4200 5524 4870 4339 4383 4745 4231 5251 3526 6119 3414 2422 6553 3927 1236 748 1898 6121 393 14861 3081 1499 11627 677 2042 5123 4326 2985 4208 4861 4715 4810 4639 3898 3601 4360 3683 4702 6575 4968 3728 3772 4333 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.05 -0.02 0.01 -0.03 0.02 -0.06 -0.04 -0.03 0.06 -0.06 -0.02 -0.07 -0.04 -0.01 -0.01 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.02 0.04 0.01 0.02 0.02 -0.00 0.04 0.11 -0.02 0.11 0.15 0.10 0.12 0.17 0.02 -0.02 0.05 0.07 -0.03 -0.03 0.05 0.04 -0.00 0.01 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.02 0.04 0.06 -0.01 0.11 -0.03 -0.04 -0.00 -0.06 -0.02 -0.02 0.05 0.11 -0.03 0.17 0.12 -0.01 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.04 -0.04 -0.05 0.04 -0.05 0.09 -0.01 -0.02 0.04 -0.02 -0.01 0.02 -0.01 -0.02 0.00 0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 888

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 534

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 60

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages