Detailed information of deep learning profile BP000137.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in esophagus muscularis mucosa using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000137.1
Cell line/tissue: esophagus muscularis mucosa
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR073TPC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.12 0.18 0.06 0.08 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.09 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.19 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 3895 4032 3899 3760 3850 4499 4217 4075 4029 4128 3562 4202 4289 3391 3626 3117 4958 5820 1968 7066 1838 1128 1514 1295 213 5538 221 186 1220 5774 681 2815 176 1247 3196 4093 5829 4467 4907 4306 4012 3932 4375 4174 4845 6740 5188 3511 3986 3836 ]
C [ 4643 4412 4526 4572 4665 4150 4070 4600 4715 4628 4522 3159 3070 4485 4619 6989 3803 4563 5161 1999 5053 8285 676 14514 16402 9049 10386 16419 1779 1655 6789 2676 214 1462 7171 5312 2877 4242 3645 4013 4074 3874 3327 2997 4102 3874 4144 4136 3362 5447 ]
G [ 4332 4191 4200 4292 4178 3989 4026 3892 4022 4632 3729 5282 5996 5345 4434 3222 3397 3638 4025 5409 8344 1045 12007 762 103 915 207 100 573 6800 8156 1100 15879 12319 2142 3679 5659 4496 4126 4460 4784 5182 5738 6554 4254 3127 3563 3682 5138 4458 ]
T [ 4140 4375 4385 4386 4317 4372 4697 4443 4244 3622 5197 4367 3655 3789 4331 3682 4852 2989 5856 2536 1775 6552 2813 439 292 1508 6196 305 13438 2781 1384 10419 741 1982 4501 3926 2645 3805 4332 4231 4140 4022 3570 3285 3809 3269 4115 5681 4524 3269 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.03 -0.02 -0.06 -0.03 0.01 -0.05 0.03 -0.08 -0.03 -0.04 0.06 -0.06 -0.03 -0.09 -0.04 -0.01 -0.00 0.03 0.01 0.02 0.00 -0.00 ]
C [ 0.01 0.04 0.00 0.02 0.03 -0.01 0.05 0.13 -0.02 0.14 0.19 0.11 0.14 0.19 0.02 -0.02 0.05 0.08 -0.03 -0.04 0.06 0.04 -0.00 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.02 0.13 -0.04 -0.05 -0.00 -0.08 -0.03 -0.02 0.05 0.12 -0.03 0.20 0.13 -0.02 0.04 0.06 0.02 0.01 0.01 0.03 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.05 -0.05 -0.07 0.06 -0.07 0.10 -0.02 -0.03 0.04 -0.03 -0.00 0.02 -0.02 -0.02 0.00 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4672

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 37

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages