Detailed information of deep learning profile BP000139.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in B cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000139.1
Cell line/tissue: B cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR075NRV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.08 0.14 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 -0.00 0.02 0.01 0.00 -0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.14 0.06 0.05 0.14 0.09 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 2118 1845 1761 2435 3200 2371 1827 2240 1736 1838 2247 2341 2364 2342 2169 1446 2080 2656 1014 353 5565 748 1527 7679 126 3067 674 162 350 1546 3232 1076 1511 3142 1746 2609 2036 2451 2132 2063 2427 2778 2068 2329 2434 2525 2373 2389 2352 2347 ]
C [ 2501 1944 2596 3195 2216 2148 1822 2519 4052 3583 3082 2886 2683 2524 2645 3415 2391 1292 7294 9092 787 5176 3955 415 59 134 503 106 769 6642 961 4778 3155 2317 2139 2082 1986 2610 3124 3574 3038 2250 2760 2448 2409 2367 2428 2523 2637 2586 ]
G [ 2501 3389 3310 1942 2437 2471 2372 2381 1807 1935 2330 2412 2327 2203 2571 1703 3070 4185 838 187 1822 3480 982 985 9500 6446 5769 9358 7830 665 4884 2719 1306 3012 2750 2432 3984 2790 2637 1925 1987 2761 2758 2786 2679 2482 2561 2749 2697 2671 ]
T [ 2653 2595 2106 2201 1920 2783 3752 2633 2178 2417 2114 2134 2399 2704 2388 3209 2232 1640 627 141 1599 369 3309 694 88 126 2827 147 824 920 696 1200 3801 1302 3138 2650 1767 1922 1880 2211 2321 1984 2187 2210 2251 2399 2411 2112 2087 2169 ]

Hypothetical CWM

   
A [ 0.01 0.01 0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.03 -0.02 -0.01 0.08 -0.05 0.04 -0.05 -0.05 -0.05 -0.01 0.02 -0.02 -0.01 0.03 -0.01 0.01 -0.00 0.00 ]
C [ 0.01 0.01 0.02 0.04 0.04 -0.01 0.10 0.15 -0.02 0.10 0.04 -0.01 -0.01 -0.06 -0.01 -0.05 -0.03 0.10 -0.02 0.05 0.03 0.02 0.01 0.00 0.00 0.01 ]
G [ 0.01 0.01 0.01 -0.00 0.03 0.05 -0.03 -0.02 0.06 0.04 -0.01 0.01 0.14 0.11 0.08 0.14 0.11 -0.02 0.10 0.03 -0.01 0.02 0.02 -0.00 0.03 0.01 ]
T [ 0.01 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.06 -0.02 -0.05 0.05 -0.03 -0.04 -0.06 0.02 -0.03 0.01 -0.02 -0.05 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 316

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 20

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages