Detailed information of deep learning profile BP000140.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in tibial artery using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000140.1
Cell line/tissue: tibial artery
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR079YAP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.18 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.09 -0.00 0.03 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.07 0.05 0.17 0.11 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4132 3705 3476 5031 6331 4636 3556 4124 3545 3860 4370 4632 4768 4809 4183 2671 4102 4960 1926 631 11934 1187 3033 14883 268 7238 1262 299 401 2756 7486 1837 2521 6611 3215 5389 3970 4629 4172 3855 4712 5982 3838 4647 4873 5295 4828 4672 4840 4752 ]
C [ 4285 3257 4577 5443 3815 3517 3023 4367 7019 6115 5531 4961 4584 4112 4569 5769 3753 2174 13603 17101 992 9854 6889 530 75 186 846 70 572 13172 928 9029 5923 4310 3665 3406 3180 4875 5977 6797 5749 3671 4932 4157 4043 4000 4093 4267 4505 4444 ]
G [ 4531 6069 5905 3361 4206 4269 3974 4153 2902 3226 4007 4184 3992 3698 4442 2854 5861 7567 1318 211 2641 6474 1529 1633 17657 10538 9636 17556 15701 608 8687 5491 1836 5288 4742 3840 7618 4849 4417 2734 2928 4759 4733 4911 4669 4014 4095 4970 4765 4761 ]
T [ 5189 5106 4179 4302 3785 5715 7584 5493 4671 4936 4229 4360 4793 5518 4943 6843 4421 3436 1290 194 2570 622 6686 1091 137 175 6393 212 1463 1601 1036 1780 7857 1928 6515 5502 3369 3784 3571 4751 4748 3725 4634 4422 4552 4828 5121 4228 4027 4180 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.04 -0.03 -0.02 0.09 -0.05 0.06 -0.07 -0.05 -0.05 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.03 0.02 0.01 0.03 0.06 0.04 -0.01 0.12 0.19 -0.02 0.12 0.06 -0.00 -0.01 -0.06 0.01 -0.04 -0.03 0.13 -0.02 0.06 0.05 0.04 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.02 0.02 0.00 0.04 0.06 -0.02 -0.02 0.09 0.06 -0.01 0.03 0.18 0.14 0.10 0.17 0.13 -0.02 0.13 0.05 -0.01 0.03 0.03 0.01 0.04 0.02 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.03 -0.08 -0.03 -0.05 0.06 -0.04 -0.04 -0.09 0.03 -0.04 0.00 -0.02 -0.06 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2536

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages