Detailed information of deep learning profile BP000135.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in OCI-LY1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000135.1
Cell line/tissue: OCI-LY1
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR072EUE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 0.00 0.10 0.15 0.05 0.07 0.15 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 0.00 0.14 0.07 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4934 4862 4937 5422 5435 5006 5067 5183 4747 5509 5287 4379 4643 4188 6377 7596 3104 8764 2897 1657 2168 1950 445 6748 383 298 2044 7782 1125 4084 503 1756 3820 5093 7164 5538 6156 5401 5127 5088 5567 5251 6205 7844 6486 4816 5066 4935 5712 5991 ]
C [ 5521 5699 5634 5231 5085 5557 5533 5634 5382 4171 3925 5648 5411 8189 4652 5393 5928 2304 5483 10063 1225 16790 20132 11855 14034 20319 2605 2365 7480 3288 629 2068 8479 6394 3571 5072 4593 4940 4969 4738 4115 3799 4874 5078 5047 4929 4345 6625 6676 5452 ]
G [ 5311 5316 5037 5060 5089 5028 5210 5544 4789 6270 7222 6358 5487 4274 4330 4459 5216 6639 10578 1969 14245 1599 211 789 205 124 641 7393 10449 1966 18847 14775 2950 4885 6922 5721 5118 5571 5869 6258 6808 7864 5192 4012 4383 4728 6096 5280 4189 4894 ]
T [ 5435 5324 5593 5488 5592 5610 5391 4840 6283 5251 4767 4816 5660 4550 5842 3753 6953 3494 2243 7512 3563 862 413 1809 6579 460 15911 3661 2147 11863 1222 2602 5952 4829 3544 4870 5334 5289 5236 5117 4711 4287 4930 4267 5285 6728 5694 4361 4624 4864 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.02 -0.03 0.03 -0.01 -0.05 -0.02 0.01 -0.03 0.02 -0.06 -0.03 -0.02 0.05 -0.05 -0.02 -0.06 -0.03 -0.02 -0.01 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.01 0.03 0.11 -0.02 0.11 0.15 0.10 0.11 0.16 0.02 -0.00 0.05 0.06 -0.03 -0.03 0.05 0.03 -0.01 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.03 0.03 0.06 -0.02 0.12 -0.03 -0.04 -0.01 -0.05 -0.02 0.00 0.05 0.10 -0.02 0.16 0.10 -0.01 0.03 0.04 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.01 -0.02 0.02 -0.02 -0.05 -0.05 -0.06 0.04 -0.04 0.08 -0.01 -0.01 0.03 -0.03 -0.01 0.02 -0.01 -0.02 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 143

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 31

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages