Detailed information of deep learning profile BP000131.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in right atrium auricular region using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000131.1
Cell line/tissue: right atrium auricular region
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR066GBX
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.07 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.15 -0.00 0.06 0.02 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.07 -0.00 0.02 0.01 0.00 -0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.14 0.06 0.04 0.13 0.09 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4133 3502 3204 5357 7527 4878 3242 4486 3134 3803 4740 5071 5312 5282 4579 2445 3965 5588 1663 296 13950 842 2955 16733 224 7568 942 361 703 2823 7879 2121 2811 7171 3585 6075 4231 4748 4634 3942 5093 6675 3969 4849 5396 5978 5169 4870 5064 4916 ]
C [ 4723 2939 4819 6568 3763 3370 2703 4560 8981 7281 6370 5714 4969 4095 4646 6247 3756 1759 15858 18919 579 12127 7825 478 81 162 688 320 993 13881 1245 9209 6608 4691 3848 3573 3291 5538 6661 8071 6523 3617 5536 4542 4444 4091 4331 4650 4872 4985 ]
G [ 4819 7151 7244 2977 4462 4558 3889 4144 2567 3012 4110 4299 4146 3745 4879 2426 7267 8599 898 83 2878 5986 1192 1422 18968 11490 10957 18350 16081 916 9224 6052 2288 5407 5319 4140 8263 5158 4344 2543 2731 5283 5083 5256 4670 4077 4294 5498 5130 5118 ]
T [ 5706 5789 4114 4479 3629 6575 9547 6191 4699 5285 4161 4297 4954 6259 5277 8263 4393 3435 962 83 1974 426 7409 748 108 161 6794 350 1604 1761 1033 1999 7674 2112 6629 5593 3596 3937 3742 4825 5034 3806 4793 4734 4871 5235 5587 4363 4315 4362 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 0.00 -0.02 -0.01 0.02 -0.00 -0.03 0.04 -0.02 -0.02 0.08 -0.04 0.04 -0.05 -0.05 -0.04 -0.01 0.01 -0.01 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.01 0.10 0.15 -0.03 0.10 0.05 -0.00 -0.00 -0.05 0.01 -0.02 -0.02 0.10 -0.01 0.04 0.03 0.02 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 -0.00 0.04 0.05 -0.02 -0.02 0.08 0.05 -0.01 0.03 0.14 0.11 0.08 0.13 0.10 -0.02 0.10 0.03 0.00 0.02 0.02 0.00 0.03 0.01 ]
T [ 0.00 0.01 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.06 -0.03 -0.05 0.05 -0.04 -0.04 -0.07 0.01 -0.03 0.00 -0.02 -0.04 -0.01 0.02 -0.02 0.02 0.01 -0.00 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages