Detailed information of deep learning profile BP000138.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in esophagus muscularis mucosa using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000138.1
Cell line/tissue: esophagus muscularis mucosa
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR074SFL
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.01 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.15 -0.00 0.06 0.02 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.07 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.15 0.06 0.04 0.14 0.09 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4294 3721 3408 5327 7345 4932 3507 4522 3401 3888 4655 5026 5135 5165 4494 2575 4159 5530 1703 438 13245 1027 3054 16504 253 7383 1245 439 824 3044 7715 2223 2922 7003 3555 5914 4248 4943 4673 4048 5112 6458 4094 4903 5239 5733 5154 4955 5083 4963 ]
C [ 4870 3304 5036 6588 4038 3760 3047 4780 8814 7326 6508 5649 5267 4446 5018 6631 4120 2026 15897 19167 869 11865 7890 620 93 246 995 433 1369 13646 1626 9447 6635 4772 4070 3765 3602 5578 6538 7837 6472 4023 5614 4637 4636 4432 4636 4832 5085 5169 ]
G [ 5012 7110 7120 3421 4705 4786 4135 4458 2856 3352 4352 4621 4375 4066 5056 2793 6994 8773 1145 133 3288 6467 1451 1758 19369 11981 11017 18560 15945 1268 9292 6126 2474 5762 5475 4453 8348 5299 4732 3026 3240 5396 5287 5527 5031 4544 4525 5642 5307 5254 ]
T [ 5681 5722 4293 4521 3769 6379 9168 6097 4786 5291 4342 4561 5080 6180 5289 7858 4584 3528 1112 119 2455 498 7462 975 142 247 6600 425 1719 1899 1224 2061 7826 2320 6757 5725 3659 4037 3914 4946 5033 3980 4862 4790 4951 5148 5542 4428 4382 4471 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.02 -0.02 0.02 -0.02 -0.03 0.03 -0.03 -0.03 0.07 -0.05 0.04 -0.06 -0.04 -0.04 -0.01 0.01 -0.02 -0.02 0.02 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.02 0.10 0.16 -0.03 0.10 0.05 -0.01 -0.02 -0.06 0.01 -0.03 -0.03 0.10 -0.02 0.04 0.03 0.02 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.00 0.03 0.05 -0.02 -0.02 0.07 0.04 -0.01 0.02 0.15 0.11 0.08 0.14 0.10 -0.02 0.10 0.04 -0.01 0.02 0.02 -0.00 0.03 0.01 ]
T [ -0.00 0.00 0.01 0.00 0.01 -0.01 -0.02 -0.03 -0.07 -0.03 -0.05 0.04 -0.04 -0.04 -0.07 0.01 -0.04 0.00 -0.02 -0.05 -0.02 0.02 -0.03 0.02 0.00 -0.01 -0.01 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages