Detailed information of deep learning profile BP000134.1

  1. Home
  2. Deep Learning Profile > BP000134.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in gastrocnemius medialis using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000134.1
Cell line/tissue: gastrocnemius medialis
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR071XWO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.09 0.15 0.05 0.07 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.08 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.16 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3825 3807 3845 4896 4583 4320 4182 4297 3421 4513 4322 3383 3441 3144 5095 6067 1838 7063 1613 895 1493 1383 245 6388 137 95 776 6493 409 1950 73 910 3098 4007 7414 4759 5531 4458 3856 3749 4731 4306 5433 8218 5910 3313 4068 3879 5066 5122 ]
C [ 4917 5013 5358 4235 4092 4728 5165 4987 5090 2759 2636 4229 5052 7965 3992 5118 5181 2170 5765 8849 840 15321 17443 10204 10945 17819 1344 1322 5812 2841 64 894 8225 6825 2428 4722 3697 4053 4354 4006 3145 2694 4252 4034 4444 4456 3146 6589 6772 4707 ]
G [ 4898 4747 4547 4333 4080 4274 4370 5359 3616 6290 7682 6399 5277 3255 3614 3858 4542 6452 8962 1096 13363 834 190 709 130 63 487 7571 11132 665 17697 14788 1788 3766 6083 4537 4143 4885 5373 6080 6863 8098 4486 2870 3470 3831 6169 4729 3143 4631 ]
T [ 4501 4574 4391 4677 5386 4819 4424 3498 6014 4579 3501 4130 4371 3777 5440 3098 6580 2456 1801 7301 2445 603 263 840 6929 164 15534 2755 788 12685 307 1549 5030 3543 2216 4123 4770 4745 4558 4306 3402 3043 3970 3019 4317 6541 4758 2944 3160 3681 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.05 -0.02 0.00 -0.04 0.02 -0.07 -0.03 -0.03 0.05 -0.06 -0.03 -0.07 -0.04 -0.01 -0.00 0.02 0.01 0.01 0.01 0.00 ]
C [ 0.01 0.03 -0.00 0.02 0.02 -0.00 0.04 0.11 -0.02 0.11 0.15 0.09 0.12 0.16 0.03 -0.01 0.05 0.08 -0.01 -0.02 0.06 0.04 0.00 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.00 0.01 0.01 0.02 0.04 0.05 -0.01 0.11 -0.02 -0.02 0.01 -0.05 -0.00 0.00 0.06 0.11 -0.03 0.16 0.11 -0.01 0.04 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.01 0.03 -0.02 -0.02 0.02 -0.01 -0.04 -0.04 -0.06 0.05 -0.05 0.08 -0.02 -0.02 0.04 -0.03 -0.01 0.02 -0.01 -0.02 0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 180

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 173

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 165

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages