Detailed information of deep learning profile BP000443.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000443.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR979ZEO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 -0.00 0.00 0.03 0.00 0.07 0.12 0.05 0.08 0.17 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.02 0.00 0.05 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 -0.00 0.17 0.11 -0.00 0.01 0.01 0.00 ]
T [ 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.08 -0.00 -0.00 0.03 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3876 3798 3755 4191 4281 4028 4112 4102 3788 3984 4005 3648 3713 3507 4548 5044 3045 5522 2829 2010 2331 1915 1174 4040 488 135 1015 6339 507 2752 140 764 2897 3703 5966 4280 5210 4520 3788 3453 4088 3750 4814 7408 5102 3030 3814 3476 4511 4847 ]
C [ 3639 3710 3830 3498 3372 3661 3875 3748 3733 3104 2840 3625 3816 5112 3503 3845 4122 2456 3788 5780 1696 9986 12765 8907 10787 15020 1487 865 4998 1360 120 736 5787 4702 2058 3369 2805 3109 3302 3041 2274 2009 3147 2903 3305 3327 2460 5265 5247 3529 ]
G [ 3715 3521 3595 3446 3519 3553 3410 3657 3205 3924 4527 4206 3682 3079 2832 3044 3290 4131 5887 2318 7912 1712 694 762 147 53 270 5807 8677 816 14598 12567 1714 3661 5156 4233 3345 3725 3884 4841 5367 6882 3488 2190 2802 2961 4621 3646 2299 3289 ]
T [ 4145 4346 4195 4240 4203 4133 3978 3868 4649 4363 4003 3896 4164 3677 4492 3442 4918 3266 2871 5267 3436 1762 742 1666 3953 167 12603 2364 1193 10447 517 1308 4977 3309 2195 3493 4015 4021 4401 4040 3646 2734 3926 2874 4166 6057 4480 2988 3318 3710 ]

Hypothetical CWM

   
A [ 0.01 -0.02 0.02 -0.01 -0.04 -0.02 -0.00 -0.04 0.01 -0.05 -0.05 -0.04 0.06 -0.07 -0.02 -0.08 -0.05 -0.02 -0.00 0.02 0.01 0.01 0.01 0.00 -0.00 -0.00 0.00 0.01 0.04 0.01 -0.01 ]
C [ 0.01 0.01 -0.01 0.02 0.07 -0.01 0.08 0.14 0.09 0.12 0.17 0.02 -0.03 0.05 0.05 -0.03 -0.04 0.04 0.04 -0.01 0.01 0.01 0.01 0.00 0.00 -0.01 -0.03 -0.01 -0.01 0.00 0.00 ]
G [ 0.01 0.01 0.02 0.03 -0.00 0.08 -0.02 -0.03 -0.01 -0.07 -0.02 -0.02 0.05 0.11 -0.03 0.18 0.13 -0.02 0.03 0.05 0.02 0.00 0.01 0.02 0.03 0.03 0.05 -0.00 -0.03 -0.01 -0.01 ]
T [ -0.01 0.02 -0.00 -0.01 0.01 -0.00 -0.04 -0.05 -0.05 0.02 -0.06 0.09 -0.02 -0.02 0.04 -0.03 -0.01 0.02 -0.02 -0.03 -0.00 0.01 0.01 0.00 0.00 -0.01 -0.01 0.01 -0.01 0.01 0.03 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1433

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 473

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 292

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000151.1 CTCF ENCSR116AKQ CD8-positive and alpha-beta T cell Homo sapiens MA0139.2
BP000152.1 CTCF ENCSR125DKL SU-DHL-6 Homo sapiens MA0139.2
BP000153.1 CTCF ENCSR125NBL neural progenitor cell Homo sapiens MA0139.2
BP000154.1 CTCF ENCSR130TQM A549 Homo sapiens MA0139.2
BP000155.1 CTCF ENCSR133AFF lower lobe of left lung Homo sapiens MA0139.2
BP000156.1 CTCF ENCSR138FTN heart right ventricle Homo sapiens MA0139.2
BP000157.1 CTCF ENCSR145HBC thyroid gland Homo sapiens MA0139.2
BP000158.1 CTCF ENCSR146BGM gastroesophageal sphincter Homo sapiens MA0139.2
BP000159.1 CTCF ENCSR160GVO HCT116 Homo sapiens MA0139.2
BP000160.1 CTCF ENCSR162KZY CD14-positive monocyte Homo sapiens MA0139.2
Showing 10 profiles of page 16 from 45 pages