Detailed information of deep learning profile BP000158.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in gastroesophageal sphincter using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000158.1
Cell line/tissue: gastroesophageal sphincter
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR146BGM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.00 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.11 0.17 0.05 0.07 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.09 -0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.06 -0.00 0.18 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 5040 4942 5046 6037 5782 5385 5262 5407 4571 5694 5597 4428 4630 4220 6422 7571 2558 8971 2380 1328 2064 1834 412 7056 258 198 1467 7934 763 3121 193 1526 4128 5183 8010 5784 6586 5630 5227 5037 5794 5373 6539 9079 6764 4603 5123 4993 6081 6271 ]
C [ 5751 5754 6019 5069 5010 5624 6028 5848 5900 3702 3416 5265 5958 9023 4885 5838 6438 2676 6556 10796 1118 18029 20671 11967 13054 21195 2187 1969 7556 3566 269 1741 9254 7144 3432 5368 4448 4980 5097 4798 3964 3559 4983 4874 5245 5153 4166 7178 7369 5467 ]
G [ 5426 5486 5294 5034 4893 5018 5078 5963 4496 6874 8237 7127 5898 3974 4233 4590 5230 6987 10727 1422 15112 1304 317 1263 448 141 938 8422 12156 1164 20746 16447 2560 4545 7173 5693 5123 5718 6014 6840 7429 8764 5399 3727 4436 4680 6690 5575 4001 5259 ]
T [ 5695 5730 5553 5772 6227 5885 5544 4694 6945 5642 4662 5092 5426 4695 6372 3913 7686 3278 2249 8366 3618 745 512 1626 8152 378 17320 3587 1437 14061 704 2198 5970 5040 3297 5067 5755 5584 5574 5237 4725 4216 4991 4232 5467 7476 5933 4166 4461 4915 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.03 -0.04 0.04 -0.01 -0.06 -0.02 0.01 -0.04 0.02 -0.07 -0.04 -0.03 0.06 -0.05 -0.03 -0.07 -0.04 -0.02 -0.00 0.02 0.00 0.01 0.00 -0.00 ]
C [ 0.02 0.04 0.00 0.03 0.03 -0.00 0.05 0.13 -0.03 0.13 0.17 0.10 0.13 0.18 0.03 -0.01 0.06 0.09 -0.02 -0.02 0.06 0.04 0.00 0.01 0.01 0.02 0.01 ]
G [ 0.02 0.00 0.01 0.01 0.03 0.04 0.07 -0.02 0.13 -0.03 -0.03 0.01 -0.05 -0.02 0.00 0.06 0.12 -0.02 0.18 0.12 -0.01 0.04 0.05 0.03 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.02 -0.02 0.03 -0.02 -0.02 0.03 -0.01 -0.05 -0.04 -0.05 0.05 -0.04 0.09 -0.02 -0.03 0.04 -0.03 -0.01 0.02 -0.01 -0.02 0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 562

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages