Detailed information of deep learning profile BP000157.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in thyroid gland using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000157.1
Cell line/tissue: thyroid gland
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR145HBC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.00 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.11 0.16 0.05 0.06 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.09 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.17 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.01 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 3951 4124 3918 3885 3962 4715 4443 4285 4112 4290 3574 4423 4439 3425 3666 3105 5157 6116 1842 7482 1738 871 1503 1346 195 6028 187 159 1223 6286 664 2651 187 1349 3251 4233 6284 4586 5095 4374 4173 4041 4505 4465 5127 6919 5402 3708 4066 3998 ]
C [ 4583 4410 4587 4614 4769 4126 4025 4437 4782 4721 4614 2976 2699 4314 4631 7266 3769 4568 5098 1816 5020 8646 559 15083 16731 9291 10350 16725 1707 1609 6502 2521 272 1477 7213 5601 2916 4347 3699 3981 4121 3832 3313 3000 4030 4012 4111 4108 3354 5506 ]
G [ 4522 4340 4365 4327 4204 3986 3943 3953 4035 4669 3626 5392 6504 5644 4709 3182 3306 3653 4274 5590 8897 857 12626 504 79 779 147 96 560 6600 8809 1085 16302 12608 2149 3654 5431 4409 3969 4442 4748 5353 5794 6470 4259 3063 3473 3742 5231 4352 ]
T [ 4230 4412 4416 4460 4351 4459 4875 4611 4357 3606 5472 4495 3644 3903 4280 3733 5054 2949 6072 2398 1631 6912 2598 353 281 1188 6602 306 13796 2791 1311 11029 525 1852 4673 3798 2655 3944 4523 4489 4244 4060 3674 3351 3870 3292 4300 5728 4635 3430 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.01 -0.06 -0.02 0.01 -0.04 0.02 -0.06 -0.03 -0.03 0.06 -0.05 -0.02 -0.07 -0.03 -0.02 -0.00 0.02 0.00 0.01 0.00 ]
C [ 0.02 0.04 0.00 0.02 0.03 -0.01 0.05 0.12 -0.03 0.12 0.16 0.10 0.12 0.17 0.02 -0.02 0.05 0.07 -0.02 -0.02 0.06 0.04 0.00 0.02 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.06 -0.02 0.12 -0.03 -0.04 0.00 -0.06 -0.02 0.00 0.05 0.11 -0.02 0.17 0.11 -0.01 0.03 0.05 0.02 0.01 0.01 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.05 -0.04 -0.06 0.05 -0.05 0.08 -0.02 -0.02 0.03 -0.03 -0.01 0.02 -0.02 -0.02 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2117

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 227

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 23

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages