Detailed information of deep learning profile BP000443.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000443.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR979ZEO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.03 -0.00 -0.00 0.08 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 ]
C [ 0.00 0.01 0.01 -0.00 0.11 0.17 -0.00 0.06 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.05 0.00 0.02 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.17 0.08 0.05 0.12 0.07 0.00 0.03 0.00 -0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]

Frequency matrix

       
A [ 3710 3318 2988 4480 6057 4166 2874 3926 2734 3646 4040 4401 4021 4015 3493 2195 3309 4977 1308 517 10447 1193 2364 12603 167 3953 1666 742 1762 3436 5267 2871 3266 4918 3442 4492 3677 4164 3896 4003 4363 4649 3868 3978 4133 4203 4240 4195 4346 4145 ]
C [ 3289 2299 3646 4621 2961 2802 2190 3488 6882 5367 4841 3884 3725 3345 4233 5156 3661 1714 12567 14598 816 8677 5807 270 53 147 762 694 1712 7912 2318 5887 4131 3290 3044 2832 3079 3682 4206 4527 3924 3205 3657 3410 3553 3519 3446 3595 3521 3715 ]
G [ 3529 5247 5265 2460 3327 3305 2903 3147 2009 2274 3041 3302 3109 2805 3369 2058 4702 5787 736 120 1360 4998 865 1487 15020 10787 8907 12765 9986 1696 5780 3788 2456 4122 3845 3503 5112 3816 3625 2840 3104 3733 3748 3875 3661 3372 3498 3830 3710 3639 ]
T [ 4847 4511 3476 3814 3030 5102 7408 4814 3750 4088 3453 3788 4520 5210 4280 5966 3703 2897 764 140 2752 507 6339 1015 135 488 4040 1174 1915 2331 2010 2829 5522 3045 5044 4548 3507 3713 3648 4005 3984 3788 4102 4112 4028 4281 4191 3755 3798 3876 ]

Hypothetical CWM

   
A [ 0.03 0.01 -0.01 0.01 -0.01 -0.01 0.00 0.00 0.01 0.01 -0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.04 -0.02 -0.02 0.09 -0.06 0.02 -0.05 -0.05 -0.04 -0.00 0.01 -0.01 -0.00 0.02 -0.01 ]
C [ -0.01 -0.01 -0.03 -0.00 0.05 0.03 0.03 0.02 0.01 0.00 0.02 0.05 0.03 -0.02 0.13 0.18 -0.03 0.11 0.05 -0.02 -0.02 -0.07 -0.01 -0.03 -0.02 0.08 -0.00 0.03 0.02 0.01 0.01 ]
G [ 0.00 0.00 -0.01 -0.01 -0.03 -0.01 0.00 0.00 0.01 0.01 0.01 -0.01 0.04 0.04 -0.04 -0.03 0.05 0.05 -0.03 0.02 0.17 0.12 0.09 0.14 0.08 -0.01 0.07 0.02 -0.01 0.01 0.01 ]
T [ -0.01 0.01 0.04 0.01 0.00 -0.00 -0.00 0.00 0.01 0.01 0.01 0.02 -0.00 -0.02 -0.05 -0.08 -0.02 -0.07 0.06 -0.04 -0.05 -0.05 0.01 -0.04 -0.00 -0.02 -0.04 -0.01 0.02 -0.02 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1433

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 473

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 292

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages