Detailed information of deep learning profile BP000152.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in SU-DHL-6 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000152.1
Cell line/tissue: SU-DHL-6
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR125DKL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 0.00 0.11 0.16 0.06 0.08 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.04 0.00 0.09 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 0.00 0.16 0.08 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4699 4532 4715 5036 4982 4762 4778 4784 4461 5074 4891 4029 4466 3974 6002 7094 2962 8165 2795 1546 2029 1727 416 6239 325 256 1897 7452 1014 3979 483 1649 3598 4824 6839 5162 5830 4948 4867 4875 5086 4972 5721 7385 5967 4447 4895 4573 5433 5476 ]
C [ 5349 5546 5412 5067 4940 5472 5286 5460 5271 4232 3979 5527 5427 7772 4566 5107 5919 2415 5043 9836 1221 16088 19248 11570 13770 19454 2523 2316 7327 3026 723 1999 8473 6252 3537 4926 4332 4885 4800 4454 4058 3813 4774 4882 4837 4911 4195 6386 6318 5285 ]
G [ 5009 5087 4947 5016 5060 4703 4912 5431 4711 5952 6795 6003 5293 4207 4335 4501 4896 6322 10264 1943 13434 1573 190 742 168 124 633 7186 9880 1977 17957 14156 2812 4715 6632 5531 5041 5456 5653 6120 6731 7406 4969 3975 4411 4672 5824 5203 4022 4827 ]
T [ 5188 5080 5171 5126 5263 5308 5269 4570 5802 4987 4580 4686 5059 4292 5342 3543 6468 3343 2143 6920 3561 857 391 1694 5982 411 15192 3291 2024 11263 1082 2441 5362 4454 3237 4626 5042 4956 4925 4796 4370 4054 4781 4003 5030 6215 5331 4083 4472 4657 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.03 -0.03 0.03 -0.01 -0.05 -0.03 0.01 -0.04 0.02 -0.07 -0.04 -0.02 0.06 -0.05 -0.02 -0.08 -0.03 -0.02 -0.01 0.02 0.01 0.01 0.00 ]
C [ 0.01 0.03 0.00 0.02 0.03 -0.01 0.03 0.12 -0.02 0.13 0.17 0.10 0.13 0.17 0.03 -0.00 0.05 0.07 -0.01 -0.02 0.06 0.04 0.00 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.02 0.13 -0.02 -0.03 -0.00 -0.06 -0.02 0.00 0.05 0.11 -0.01 0.17 0.11 -0.01 0.04 0.05 0.02 0.01 0.01 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.01 -0.02 0.02 -0.02 -0.06 -0.05 -0.06 0.04 -0.05 0.09 -0.01 -0.02 0.03 -0.03 -0.01 0.02 -0.01 -0.02 -0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 194

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages