Detailed information of deep learning profile BP000153.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in neural progenitor cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000153.1
Cell line/tissue: neural progenitor cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR125NBL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.14 0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.06 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.14 0.07 0.05 0.13 0.08 0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4593 4212 3855 5411 6784 5161 3953 4800 3846 4262 4969 5058 4904 5102 4558 3212 4571 5595 2211 1011 11744 1883 3390 15516 378 5656 2327 733 1361 4392 6504 2651 3753 6443 3913 5487 4467 5189 4703 4637 5138 5612 4748 5157 5263 5307 5254 5354 4992 5054 ]
C [ 5042 3920 5297 6414 4676 4502 3930 5052 8314 7320 6294 5658 5585 5174 5803 7049 4877 2650 15207 18593 1685 10279 7725 557 115 238 899 564 2410 12008 2716 9388 6258 4767 4509 4309 4498 5503 6168 6935 5739 5016 5367 5097 4955 5156 5197 5122 5296 5243 ]
G [ 5293 6749 6999 4147 4816 5007 4874 4847 3695 3966 4589 4913 4955 4395 5149 3456 6328 8459 1763 626 2847 7518 2068 2759 19857 14308 12171 18585 14808 1865 9413 5311 3054 6059 5521 4959 7651 5473 5540 4214 4571 5384 5582 5519 5602 5095 5132 5389 5738 5415 ]
T [ 5691 5738 4468 4647 4343 5949 7862 5920 4764 5071 4767 4990 5175 5948 5109 6902 4843 3915 1438 389 4343 939 7436 1787 269 417 5222 737 2040 2354 1986 3269 7554 3350 6676 5864 4003 4454 4208 4833 5171 4607 4922 4846 4799 5061 5036 4754 4593 4907 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.03 -0.02 -0.01 0.07 -0.04 0.03 -0.05 -0.04 -0.04 -0.01 0.01 -0.02 -0.01 0.02 -0.02 0.01 -0.01 -0.00 ]
C [ 0.02 0.01 0.01 0.02 0.04 0.03 -0.01 0.09 0.15 -0.01 0.09 0.04 -0.01 -0.03 -0.06 -0.01 -0.04 -0.02 0.09 -0.00 0.05 0.03 0.02 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.01 -0.00 0.03 0.04 -0.02 -0.02 0.05 0.04 -0.01 0.02 0.15 0.11 0.09 0.13 0.10 -0.00 0.09 0.03 -0.00 0.02 0.02 0.00 0.03 0.01 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.03 -0.07 -0.02 -0.05 0.05 -0.03 -0.03 -0.05 0.01 -0.03 0.00 -0.02 -0.04 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 506

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 218

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 148

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 30

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages