Detailed information of deep learning profile BP000155.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in lower lobe of left lung using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000155.1
Cell line/tissue: lower lobe of left lung
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR133AFF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.10 0.15 0.05 0.06 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 -0.00 0.16 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4054 3918 4093 4755 4486 4310 4252 4397 3670 4476 4496 3486 3637 3229 5232 6081 2195 7329 2031 1056 1725 1482 220 5651 227 136 1073 6673 575 2566 153 1165 3363 4240 6514 4737 5340 4588 4166 4086 4615 4429 5285 7530 5570 3623 4070 3949 4911 5022 ]
C [ 4588 4612 4751 4115 4045 4558 4700 4587 4570 3083 2812 4346 4716 7177 3856 4659 5071 2032 5125 8274 1001 14275 16878 9870 10561 17031 1741 1370 6123 2575 189 1235 7350 5616 2682 4206 3610 3881 4074 3890 3116 2744 3941 3710 4180 4162 3246 5781 5992 4392 ]
G [ 4346 4407 4142 3985 4001 3981 4092 4766 3739 5378 6376 5606 4686 3220 3374 3577 4138 5482 8458 1372 11851 1159 111 773 198 83 519 6634 9650 1009 16636 13402 1991 3728 5731 4595 4097 4585 4878 5312 6102 7039 4238 2922 3379 3628 5385 4407 3090 4137 ]
T [ 4503 4554 4505 4636 4959 4642 4447 3741 5512 4554 3807 4053 4452 3865 5029 3174 6087 2648 1877 6789 2914 575 282 1197 6505 241 14158 2814 1143 11341 513 1689 4787 3907 2564 3953 4444 4437 4373 4203 3658 3279 4027 3329 4362 6078 4790 3354 3498 3940 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.05 -0.02 0.01 -0.04 0.02 -0.07 -0.04 -0.04 0.06 -0.05 -0.03 -0.07 -0.03 -0.02 -0.01 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.04 0.00 0.02 0.03 -0.01 0.04 0.11 -0.02 0.11 0.15 0.09 0.12 0.16 0.02 -0.03 0.04 0.07 -0.02 -0.03 0.05 0.04 -0.00 0.01 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.00 0.01 0.02 0.04 0.06 -0.02 0.11 -0.03 -0.04 -0.00 -0.06 -0.02 -0.01 0.05 0.11 -0.03 0.17 0.11 -0.02 0.03 0.05 0.02 0.01 0.01 0.03 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.05 -0.04 -0.06 0.05 -0.05 0.09 -0.02 -0.03 0.04 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1777

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 581

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 337

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 52

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages