Detailed information of deep learning profile BP000154.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000154.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR130TQM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.14 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.08 -0.00 0.03 0.01 0.01 0.00 -0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 -0.00 0.15 0.06 0.05 0.14 0.10 -0.00 0.05 0.01 -0.00 0.00 0.00 -0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 0.00 ]

Frequency matrix

       
A [ 3571 4815 5943 4438 3422 4148 3495 3804 4388 4385 4463 4583 4127 2789 4012 4847 2099 786 11183 1526 2935 14082 328 6746 1299 319 430 2723 7036 1678 2525 6270 3119 5192 3782 4699 4069 3852 4588 5413 3841 4512 4697 4876 4711 4653 4602 4520 4577 4386 ]
C [ 4626 5275 3861 3651 3216 4375 6688 5911 5331 4940 4647 4331 4612 5663 3757 2232 12725 16271 1300 9082 6542 550 128 138 657 91 619 12993 938 9387 5831 4252 3711 3348 3339 4679 5600 6552 5597 3931 4812 4190 4092 4173 4312 4312 4531 4543 4447 4579 ]
G [ 5670 3548 4193 4261 4125 4108 3221 3430 3938 4230 4130 3724 4475 3017 5625 7414 1594 499 2586 6514 1743 1845 17236 10815 9766 17230 15390 578 8821 4893 1604 5196 4671 3856 7485 4653 4608 3001 3056 4611 4807 4791 4761 4238 4213 4753 4750 4634 4556 4651 ]
T [ 4001 4230 3871 5518 7105 5237 4464 4723 4211 4313 4628 5230 4654 6399 4474 3375 1450 312 2799 746 6648 1391 176 169 6146 228 1429 1574 1073 1910 7908 2150 6367 5472 3262 3837 3591 4463 4627 3913 4408 4375 4318 4581 4632 4150 3985 4171 4288 4252 ]

Hypothetical CWM

   
A [ 0.01 0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.03 -0.01 -0.01 0.08 -0.05 0.05 -0.06 -0.03 -0.05 -0.02 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.01 0.01 0.04 0.03 -0.01 0.09 0.15 -0.02 0.10 0.04 0.01 -0.02 -0.05 -0.01 -0.03 -0.03 0.12 -0.02 0.06 0.04 0.03 0.01 0.01 0.00 0.02 ]
G [ 0.01 0.01 -0.00 0.03 0.04 -0.02 -0.02 0.06 0.04 -0.01 0.02 0.15 0.11 0.09 0.14 0.11 -0.03 0.11 0.03 -0.01 0.02 0.02 -0.00 0.03 0.01 ]
T [ 0.01 0.01 0.02 -0.00 -0.01 -0.02 -0.06 -0.02 -0.05 0.05 -0.03 -0.03 -0.07 0.03 -0.03 0.01 -0.02 -0.05 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 852

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 670

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages