Detailed information of deep learning profile BP000159.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000159.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR160GVO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.10 0.15 0.05 0.08 0.16 -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.03 -0.00 0.09 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.07 -0.00 0.17 0.11 -0.00 0.00 0.02 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.09 -0.00 -0.00 0.04 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 2761 2688 2731 3595 3424 3174 3040 3013 2456 3145 2964 2317 2431 2309 3550 4375 1306 5155 1131 560 963 866 249 4293 92 62 387 4809 213 1249 44 473 2060 2794 5754 3473 4189 3253 2606 2544 3318 2910 4118 7096 4284 1992 2763 2349 4161 3807 ]
C [ 3575 3661 3952 3120 2919 3360 3678 3652 3818 2020 1796 3110 3574 5886 2968 3703 3894 1649 3913 7093 543 11150 12480 7770 8613 12907 746 725 3808 1979 41 461 6252 5368 1409 3563 2581 2903 3032 2832 1972 1550 2873 2576 3282 3196 1825 5680 5128 3330 ]
G [ 3607 3536 3363 3155 2973 3218 3265 4001 2551 4600 5814 4663 3919 2367 2594 2852 3250 4499 6708 736 10032 606 161 429 62 42 277 5901 8610 383 12933 11311 1053 2703 4650 3128 2921 3594 4118 4558 5561 6966 3095 1635 2310 2537 5069 3411 1965 3545 ]
T [ 3189 3247 3086 3262 3816 3380 3149 2466 4307 3367 2558 3042 3208 2570 4020 2202 4682 1829 1380 4743 1594 510 242 640 4365 121 11722 1697 501 9521 114 887 3767 2267 1319 2968 3441 3382 3376 3198 2281 1706 3046 1825 3256 5407 3475 1692 1878 2450 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.02 -0.03 0.03 -0.01 -0.06 -0.03 -0.01 -0.04 0.02 -0.08 -0.06 -0.06 0.06 -0.07 -0.04 -0.07 -0.04 -0.01 -0.00 0.03 0.01 0.02 0.01 0.00 0.00 0.00 0.00 0.01 0.04 0.01 -0.01 ]
C [ 0.01 0.03 0.00 0.02 0.03 -0.00 0.04 0.11 -0.02 0.11 0.15 0.09 0.13 0.16 0.02 -0.02 0.04 0.09 -0.01 -0.03 0.06 0.05 -0.01 0.02 0.01 0.02 0.01 0.02 0.01 -0.02 -0.00 0.00 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.02 0.03 0.05 -0.02 0.12 -0.02 -0.03 0.01 -0.06 -0.02 0.00 0.05 0.11 -0.04 0.17 0.13 -0.02 0.04 0.07 0.03 0.02 0.02 0.03 0.03 0.04 0.06 0.00 -0.02 0.00 0.00 ]
T [ 0.00 0.00 0.01 -0.01 0.03 -0.00 -0.02 0.02 -0.00 -0.03 -0.05 -0.06 0.05 -0.05 0.10 -0.02 -0.03 0.05 -0.04 -0.01 0.03 -0.02 -0.02 0.01 0.01 0.01 0.00 0.01 -0.00 -0.01 0.01 -0.01 0.00 0.02 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 194

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages