Detailed information of deep learning profile BP000151.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in CD8-positive and alpha-beta T cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000151.1
Cell line/tissue: CD8-positive and alpha-beta T cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR116AKQ
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.08 0.15 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.15 0.06 0.04 0.14 0.10 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3442 3006 2729 4166 5641 3847 2854 3611 2861 3196 3715 3803 4051 4120 3557 2269 3327 4264 1571 446 10143 1097 2467 13042 244 5593 960 290 499 2231 5999 1643 2257 5457 2820 4571 3427 4036 3587 3291 4092 4957 3311 3813 4137 4474 4001 3934 3870 3924 ]
C [ 4040 2851 4189 5196 3375 3216 2665 3931 6792 5793 5200 4688 4363 3752 4143 5227 3582 1864 12145 15151 1008 8896 6458 594 117 219 765 194 978 11456 1085 8077 5308 3899 3358 3135 2954 4457 5349 6304 5260 3455 4623 3918 3876 3741 3857 3984 4249 4203 ]
G [ 3998 5640 5621 2970 3916 3923 3652 3788 2559 2916 3518 3874 3576 3358 4222 2582 5484 7186 1252 215 2614 5473 1438 1396 15498 9982 9196 15238 13204 824 8050 4563 1892 4817 4408 3781 6788 4353 4045 2598 2683 4391 4349 4517 4149 3736 3842 4538 4414 4353 ]
T [ 4518 4501 3459 3666 3066 5012 6827 4668 3786 4093 3565 3633 4008 4768 4076 5920 3605 2684 1030 186 2233 532 5635 966 139 204 5077 276 1317 1487 864 1715 6541 1825 5412 4511 2829 3152 3017 3805 3963 3195 3715 3750 3836 4047 4298 3542 3465 3518 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 0.01 -0.01 -0.02 0.02 -0.00 -0.03 0.04 -0.02 -0.02 0.08 -0.04 0.05 -0.05 -0.04 -0.04 -0.01 0.02 -0.02 -0.02 0.03 -0.01 0.02 0.00 0.00 ]
C [ 0.02 0.02 0.01 0.02 0.05 0.04 -0.01 0.10 0.15 -0.02 0.10 0.04 -0.00 -0.01 -0.05 0.00 -0.03 -0.03 0.11 -0.02 0.06 0.03 0.02 0.01 0.00 0.00 0.01 ]
G [ 0.00 0.01 0.01 0.02 0.00 0.03 0.05 -0.02 -0.02 0.07 0.04 -0.01 0.01 0.15 0.11 0.08 0.15 0.11 -0.03 0.10 0.03 -0.01 0.03 0.02 -0.00 0.03 0.01 ]
T [ 0.01 0.01 0.02 0.01 0.02 0.00 -0.01 -0.03 -0.06 -0.02 -0.05 0.05 -0.03 -0.04 -0.07 0.03 -0.04 0.01 -0.02 -0.05 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages