Detailed information of deep learning profile BP000156.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart right ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000156.1
Cell line/tissue: heart right ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR138FTN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.09 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.18 -0.00 0.05 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.10 -0.00 0.04 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.07 0.06 0.18 0.12 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 3644 4987 6402 4579 3683 4133 3609 3917 4591 4584 4700 4750 4221 2907 4285 5071 2139 925 11532 1586 3040 15049 324 6990 1422 358 511 3045 7354 1779 2686 6586 3226 5433 4022 4806 4196 4114 4737 5906 3966 4711 4941 5199 4956 4806 4822 4786 4828 4609 ]
C [ 4762 5766 4057 3863 3393 4740 7267 6371 5656 5281 4965 4533 5034 6171 4027 2336 13708 17343 1222 9477 7127 532 84 172 769 124 731 13282 1064 9520 6196 4519 4062 3618 3564 4905 6023 6892 5942 4046 5129 4441 4225 4345 4465 4621 4810 4638 4789 4784 ]
G [ 6134 3673 4443 4658 4276 4441 3275 3645 4260 4524 4371 4099 4624 3162 5916 7959 1550 311 3046 7022 1770 1887 18237 11440 10463 18042 15971 733 9271 5448 1974 5514 4935 4024 7879 5136 4914 3140 3381 4933 5145 5207 5100 4507 4534 5093 5059 5061 4787 5087 ]
T [ 4283 4397 3921 5723 7471 5509 4672 4890 4316 4434 4787 5441 4944 6583 4595 3457 1426 244 3023 738 6886 1355 178 221 6169 299 1610 1763 1134 2076 7967 2204 6600 5748 3358 3976 3690 4677 4763 3938 4583 4464 4557 4772 4868 4303 4132 4338 4419 4343 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.05 -0.02 -0.02 0.10 -0.06 0.06 -0.07 -0.05 -0.06 -0.02 0.02 -0.03 -0.02 0.04 -0.02 0.01 -0.00 0.00 ]
C [ 0.01 0.02 0.05 0.04 -0.01 0.12 0.19 -0.03 0.11 0.06 -0.01 -0.04 -0.08 -0.01 -0.06 -0.04 0.14 -0.02 0.07 0.05 0.03 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.00 0.04 0.06 -0.03 -0.04 0.08 0.05 -0.03 0.02 0.19 0.14 0.11 0.19 0.14 -0.03 0.14 0.05 -0.02 0.03 0.02 0.00 0.04 0.01 ]
T [ 0.01 0.01 0.02 -0.01 -0.02 -0.04 -0.09 -0.03 -0.06 0.06 -0.04 -0.04 -0.08 0.03 -0.05 0.01 -0.03 -0.07 -0.02 0.04 -0.05 0.03 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1058

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 21

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages