Detailed information of deep learning profile BP000160.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in CD14-positive monocyte using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000160.1
Cell line/tissue: CD14-positive monocyte
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR162KZY
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.03 -0.00 -0.00 0.08 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.16 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 0.00 0.03 0.01 0.00 -0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.15 0.07 0.05 0.14 0.09 0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3693 3158 2991 4333 5741 4111 2985 3739 2899 3260 3927 4002 4144 4122 3645 2408 3543 4463 1574 471 10060 1260 2598 13057 295 5360 1354 451 805 2941 5630 2039 2656 5373 3040 4526 3604 4132 3761 3631 4118 4841 3654 3920 4200 4295 4141 4022 4186 4107 ]
C [ 4023 3008 4216 5308 3544 3394 2847 4010 6945 6000 5192 4675 4368 4034 4411 5609 3770 1991 12578 15526 1180 8693 6387 547 125 172 842 323 1357 10669 1696 7861 5105 3886 3425 3403 3249 4408 5023 5747 4986 3812 4447 4032 3942 3952 3915 4107 4259 4161 ]
G [ 4106 5563 5709 3026 3975 4038 3653 3878 2773 3046 3696 4013 3798 3492 4168 2627 5292 6985 1247 259 2465 5901 1555 1774 15838 10654 9639 15221 12840 1186 7936 4420 2146 4911 4485 3860 6563 4486 4330 3043 3343 4327 4421 4534 4406 4045 4135 4587 4347 4503 ]
T [ 4611 4704 3517 3766 3173 4890 6948 4806 3816 4127 3618 3743 4123 4785 4209 5789 3828 2994 1034 177 2728 579 5893 1055 175 247 4598 438 1431 1637 1171 2113 6526 2263 5483 4644 3017 3407 3319 4012 3986 3453 3911 3947 3885 4141 4242 3717 3641 3662 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 0.00 -0.02 -0.01 0.03 -0.01 -0.03 0.04 -0.02 -0.02 0.09 -0.05 0.04 -0.05 -0.05 -0.05 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.01 0.05 0.03 -0.01 0.11 0.16 -0.02 0.11 0.04 -0.01 -0.02 -0.06 -0.01 -0.04 -0.03 0.10 -0.02 0.05 0.03 0.02 0.01 0.00 0.00 0.01 ]
G [ 0.00 0.01 0.01 0.01 -0.01 0.03 0.05 -0.02 -0.02 0.07 0.04 -0.02 0.01 0.15 0.11 0.09 0.14 0.11 -0.02 0.11 0.03 -0.01 0.02 0.01 -0.00 0.03 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.02 -0.03 -0.07 -0.03 -0.06 0.06 -0.03 -0.04 -0.06 0.02 -0.03 0.01 -0.02 -0.05 -0.01 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 184

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages