Detailed information of deep learning profile BP000179.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in neural crest cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000179.1
Cell line/tissue: neural crest cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR218MVT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 -0.00 0.00 0.00 0.03 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.02 0.00 ]
C [ 0.24 0.10 0.11 0.26 -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.03 0.01 -0.01 -0.01 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.05 0.08 0.00 0.25 0.16 -0.00 0.00 0.02 0.00 ]
T [ 0.00 0.00 0.02 0.00 0.16 -0.01 -0.00 0.05 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1 13 1 0 1 16 0 2 0 0 8 15 20 9 11 14 5 7 3 6 7 10 8 6 5 10 11 10 7 9 3 4 7 9 8 12 9 4 11 7 12 9 9 12 9 13 8 11 9 12 ]
C [ 52 39 33 52 1 2 23 16 1 2 30 31 16 20 22 24 38 36 40 32 27 15 33 33 38 25 25 23 30 25 28 22 25 15 17 22 21 20 20 17 24 20 23 22 17 24 17 15 20 21 ]
G [ 0 1 1 1 2 29 28 2 51 50 6 3 14 17 11 8 3 4 2 2 10 12 3 9 4 4 6 8 10 12 11 12 13 15 14 11 12 17 15 18 11 15 13 7 10 9 15 17 13 12 ]
T [ 0 0 18 0 49 6 2 33 1 1 9 4 3 7 9 7 7 6 8 13 9 16 9 5 6 14 11 12 6 7 11 15 8 14 14 8 11 12 7 11 6 9 8 12 17 7 13 10 11 8 ]

Hypothetical CWM

   
A [ -0.07 0.05 -0.11 -0.05 -0.04 0.11 -0.10 -0.03 -0.13 -0.05 -0.01 -0.01 0.05 0.02 0.02 0.01 0.01 ]
C [ 0.25 0.13 0.18 0.26 0.02 -0.03 0.04 0.08 -0.07 -0.06 0.06 0.03 -0.02 0.01 -0.00 -0.01 -0.02 ]
G [ -0.09 0.00 -0.12 -0.05 -0.00 0.09 0.17 -0.03 0.25 0.17 -0.02 0.06 0.07 0.02 0.01 0.02 0.04 ]
T [ -0.10 -0.10 0.08 -0.11 0.17 -0.03 -0.05 0.07 -0.06 -0.01 0.03 -0.03 -0.03 0.01 0.02 0.02 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 19868

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 110

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_0

Num. of seqlets: 100

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000151.1 CTCF ENCSR116AKQ CD8-positive and alpha-beta T cell Homo sapiens MA0139.2
BP000152.1 CTCF ENCSR125DKL SU-DHL-6 Homo sapiens MA0139.2
BP000153.1 CTCF ENCSR125NBL neural progenitor cell Homo sapiens MA0139.2
BP000154.1 CTCF ENCSR130TQM A549 Homo sapiens MA0139.2
BP000155.1 CTCF ENCSR133AFF lower lobe of left lung Homo sapiens MA0139.2
BP000156.1 CTCF ENCSR138FTN heart right ventricle Homo sapiens MA0139.2
BP000157.1 CTCF ENCSR145HBC thyroid gland Homo sapiens MA0139.2
BP000158.1 CTCF ENCSR146BGM gastroesophageal sphincter Homo sapiens MA0139.2
BP000159.1 CTCF ENCSR160GVO HCT116 Homo sapiens MA0139.2
BP000160.1 CTCF ENCSR162KZY CD14-positive monocyte Homo sapiens MA0139.2
Showing 10 profiles of page 16 from 45 pages