Detailed information of deep learning profile BP000179.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in neural crest cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000179.1
Cell line/tissue: neural crest cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR218MVT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.05 -0.00 -0.01 0.16 0.00 0.02 0.00 0.00 ]
C [ 0.00 0.02 0.00 -0.00 0.16 0.25 0.00 0.08 0.05 0.00 0.00 0.00 0.00 0.00 ]
G [ -0.01 -0.01 0.01 0.03 -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.26 0.11 0.10 0.24 ]
T [ 0.00 0.02 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.03 0.00 0.00 -0.00 0.01 -0.00 ]

Frequency matrix

       
A [ 8 11 10 13 7 17 12 8 9 6 11 7 12 11 8 14 14 8 15 11 7 6 12 11 14 6 5 9 16 9 13 8 6 7 7 9 7 3 4 9 1 1 33 2 6 49 0 18 0 0 ]
C [ 12 13 17 15 9 10 7 13 15 11 18 15 17 12 11 14 15 13 12 11 12 10 8 6 4 4 9 3 12 10 2 2 4 3 8 11 17 14 3 6 50 51 2 28 29 2 1 1 1 0 ]
G [ 21 20 15 17 24 17 22 23 20 24 17 20 20 21 22 17 15 25 22 28 25 30 23 25 25 38 33 33 15 27 32 40 36 38 24 22 20 16 31 30 2 1 16 23 2 1 52 33 39 52 ]
T [ 12 9 11 8 13 9 12 9 9 12 7 11 4 9 12 8 9 7 4 3 9 7 10 11 10 5 6 8 10 7 6 3 7 5 14 11 9 20 15 8 0 0 2 0 16 1 0 1 13 1 ]

Hypothetical CWM

   
A [ 0.01 0.02 0.02 0.01 -0.03 -0.03 0.03 -0.01 -0.06 0.07 -0.05 -0.03 0.17 -0.11 0.08 -0.10 -0.10 ]
C [ 0.04 0.02 0.01 0.02 0.07 0.06 -0.02 0.17 0.25 -0.03 0.17 0.09 -0.00 -0.05 -0.12 0.00 -0.09 ]
G [ -0.02 -0.01 -0.00 0.01 -0.02 0.03 0.06 -0.06 -0.07 0.08 0.04 -0.03 0.02 0.26 0.18 0.13 0.25 ]
T [ 0.01 0.01 0.02 0.02 0.05 -0.01 -0.01 -0.05 -0.13 -0.03 -0.10 0.11 -0.04 -0.05 -0.11 0.05 -0.07 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 19868

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 110

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_0

Num. of seqlets: 100

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages