Detailed information of deep learning profile BP000012.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HeLa-S3 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000012.1
Cell line/tissue: HeLa-S3
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000AOA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.00 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 0.00 0.10 0.16 0.06 0.07 0.17 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.08 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 0.00 0.17 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4886 4688 4826 5265 5266 5004 5116 5089 4595 5252 5167 4267 4500 3984 5970 6963 3022 8247 2869 1680 2378 2031 578 6219 447 290 1663 7784 864 3837 266 1362 3951 4945 7426 5269 6188 5318 4870 4783 5304 5112 6071 8395 6345 4315 4783 4617 5816 5903 ]
C [ 5145 5429 5206 4771 4784 5195 5257 5262 5104 4005 3740 5177 5239 7690 4548 5190 5875 2555 5329 9222 1476 15224 18748 11147 12927 19510 2526 1867 7152 2157 315 1461 8171 6354 3107 4747 4121 4583 4586 4389 3666 3234 4430 4391 4595 4671 3761 6582 6665 5001 ]
G [ 4904 4905 4762 4824 4730 4581 4705 5179 4565 5868 6654 6093 5319 4056 3976 4188 4648 6020 9558 2136 12435 1904 358 671 243 110 477 7167 10495 1452 18961 15324 2426 4422 6509 5471 4730 5232 5561 6068 7033 8082 4978 3488 4094 4280 6093 5099 3567 4652 ]
T [ 5316 5229 5457 5391 5471 5471 5173 4721 5987 5126 4690 4714 5193 4521 5757 3910 6706 3429 2495 7213 3962 1092 567 2214 6634 341 15585 3433 1740 12805 709 2104 5703 4530 3209 4764 5212 5118 5234 5011 4248 3823 4772 3977 5217 6985 5614 3953 4203 4695 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.02 -0.04 0.02 -0.02 -0.05 -0.03 0.00 -0.04 0.01 -0.06 -0.04 -0.03 0.05 -0.06 -0.02 -0.08 -0.04 -0.02 -0.01 0.02 0.00 0.00 -0.00 -0.01 ]
C [ 0.02 0.04 0.01 0.03 0.04 0.00 0.05 0.12 -0.01 0.12 0.17 0.11 0.13 0.18 0.03 -0.00 0.06 0.07 -0.02 -0.02 0.06 0.04 0.00 0.02 0.02 0.02 0.01 ]
G [ 0.02 0.02 0.01 0.02 0.04 0.04 0.07 -0.00 0.12 -0.02 -0.03 -0.00 -0.06 -0.04 0.00 0.06 0.12 -0.00 0.18 0.12 -0.01 0.04 0.05 0.02 0.01 0.02 0.03 ]
T [ 0.00 -0.01 0.01 -0.02 0.02 -0.02 -0.02 0.01 -0.02 -0.05 -0.05 -0.06 0.03 -0.06 0.08 -0.01 -0.02 0.04 -0.03 -0.02 0.01 -0.02 -0.03 -0.01 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 487

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000152.1 CTCF ENCSR125DKL SU-DHL-6 Homo sapiens MA0139.2
BP000153.1 CTCF ENCSR125NBL neural progenitor cell Homo sapiens MA0139.2
BP000154.1 CTCF ENCSR130TQM A549 Homo sapiens MA0139.2
BP000155.1 CTCF ENCSR133AFF lower lobe of left lung Homo sapiens MA0139.2
BP000156.1 CTCF ENCSR138FTN heart right ventricle Homo sapiens MA0139.2
BP000157.1 CTCF ENCSR145HBC thyroid gland Homo sapiens MA0139.2
BP000158.1 CTCF ENCSR146BGM gastroesophageal sphincter Homo sapiens MA0139.2
BP000159.1 CTCF ENCSR160GVO HCT116 Homo sapiens MA0139.2
BP000160.1 CTCF ENCSR162KZY CD14-positive monocyte Homo sapiens MA0139.2
BP000161.1 CTCF ENCSR163ULN HFFc6 Homo sapiens MA0139.2
Showing 10 profiles of page 16 from 45 pages