Detailed information of deep learning profile BP000012.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HeLa-S3 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000012.1
Cell line/tissue: HeLa-S3
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000AOA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.17 0.00 0.06 0.01 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.08 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.17 0.07 0.06 0.16 0.10 0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.00 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4695 4203 3953 5614 6985 5217 3977 4772 3823 4248 5011 5234 5118 5212 4764 3209 4530 5703 2104 709 12805 1740 3433 15585 341 6634 2214 567 1092 3962 7213 2495 3429 6706 3910 5757 4521 5193 4714 4690 5126 5987 4721 5173 5471 5471 5391 5457 5229 5316 ]
C [ 4652 3567 5099 6093 4280 4094 3488 4978 8082 7033 6068 5561 5232 4730 5471 6509 4422 2426 15324 18961 1452 10495 7167 477 110 243 671 358 1904 12435 2136 9558 6020 4648 4188 3976 4056 5319 6093 6654 5868 4565 5179 4705 4581 4730 4824 4762 4905 4904 ]
G [ 5001 6665 6582 3761 4671 4595 4391 4430 3234 3666 4389 4586 4583 4121 4747 3107 6354 8171 1461 315 2157 7152 1867 2526 19510 12927 11147 18748 15224 1476 9222 5329 2555 5875 5190 4548 7690 5239 5177 3740 4005 5104 5262 5257 5195 4784 4771 5206 5429 5145 ]
T [ 5903 5816 4617 4783 4315 6345 8395 6071 5112 5304 4783 4870 5318 6188 5269 7426 4945 3951 1362 266 3837 864 7784 1663 290 447 6219 578 2031 2378 1680 2869 8247 3022 6963 5970 3984 4500 4267 5167 5252 4595 5089 5116 5004 5266 5265 4826 4688 4886 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.01 -0.03 -0.02 0.01 -0.02 -0.03 0.04 -0.02 -0.01 0.08 -0.06 0.03 -0.06 -0.05 -0.05 -0.02 0.01 -0.02 -0.02 0.02 -0.02 0.01 -0.01 0.00 ]
C [ 0.03 0.02 0.01 0.02 0.05 0.04 -0.01 0.12 0.18 -0.00 0.12 0.06 0.00 -0.04 -0.06 -0.00 -0.03 -0.02 0.12 -0.00 0.07 0.04 0.04 0.02 0.01 0.02 0.02 ]
G [ 0.01 0.02 0.02 0.02 0.00 0.04 0.06 -0.02 -0.02 0.07 0.06 -0.00 0.03 0.18 0.13 0.11 0.17 0.12 -0.01 0.12 0.05 0.00 0.04 0.03 0.01 0.04 0.02 ]
T [ -0.01 -0.00 0.00 0.00 0.02 -0.01 -0.02 -0.04 -0.08 -0.02 -0.06 0.05 -0.03 -0.04 -0.06 0.01 -0.04 0.00 -0.03 -0.05 -0.02 0.02 -0.04 0.02 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 487

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages