Detailed information of deep learning profile BP000161.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HFFc6 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000161.1
Cell line/tissue: HFFc6
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR163ULN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 0.00 0.08 0.14 0.05 0.08 0.15 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 0.00 0.06 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 0.00 0.14 0.08 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4032 3915 3978 4204 4096 3995 4084 3995 3978 4184 3906 3620 3887 3435 4801 5493 2767 6142 2681 1580 1818 1467 188 4169 365 150 1489 5804 804 3481 404 1172 3165 4029 5681 4196 4894 4293 3985 3978 4176 4139 4689 6050 4863 3732 3930 3721 4478 4490 ]
C [ 4369 4442 4403 4137 4195 4459 4311 4501 4256 3710 3639 4573 4354 5953 3891 4354 4953 2520 4368 7494 1396 12485 16253 10056 11569 16258 1986 1679 5893 2358 555 1438 6586 5003 2749 3977 3444 3957 3958 3682 3227 3133 3841 3821 3932 3861 3507 5271 5228 4258 ]
G [ 4058 4155 4069 4158 4219 3954 4054 4157 3946 4592 5110 4579 4206 3746 3532 3724 3718 4916 7358 2177 9914 1683 79 549 147 56 387 6349 8169 1555 14586 11907 2309 3837 5511 4629 4120 4346 4432 4801 5647 6221 4142 3375 3580 3934 4864 4244 3233 3829 ]
T [ 4261 4208 4270 4221 4210 4312 4271 4067 4540 4234 4065 3948 4273 3586 4496 3149 5282 3142 2313 5469 3592 1085 200 1946 4639 256 12858 2888 1854 9326 1175 2203 4660 3851 2779 3918 4262 4124 4345 4259 3670 3227 4048 3474 4345 5193 4419 3484 3781 4143 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.02 -0.00 -0.04 0.01 -0.06 -0.03 -0.03 0.05 -0.05 -0.02 -0.07 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.02 0.00 0.01 0.02 -0.01 0.03 0.09 -0.02 0.10 0.14 0.09 0.11 0.16 0.02 -0.02 0.04 0.05 -0.03 -0.03 0.04 0.03 -0.01 0.01 0.00 0.01 0.00 ]
G [ 0.01 0.01 0.00 0.01 0.02 0.03 0.05 -0.01 0.09 -0.02 -0.03 -0.01 -0.06 -0.03 -0.02 0.04 0.10 -0.02 0.16 0.10 -0.02 0.03 0.04 0.02 0.00 0.00 0.01 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.01 0.01 -0.01 -0.04 -0.05 -0.05 0.03 -0.06 0.08 -0.02 -0.02 0.03 -0.03 -0.01 0.02 -0.01 -0.02 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3146

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 847

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 679

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 267

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages