Detailed information of deep learning profile BP000004.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in endothelial cell of umbilical vein using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000004.1
Cell line/tissue: endothelial cell of umbilical vein
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000ALA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.01 -0.00 -0.00 0.04 -0.00 -0.01 0.11 -0.00 0.02 -0.01 -0.00 -0.00 -0.01 0.01 -0.00 -0.00 0.01 -0.01 ]
C [ 0.00 0.02 0.01 -0.00 0.14 0.26 0.00 0.09 0.03 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.13 0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.02 0.03 -0.00 -0.00 0.01 0.02 -0.00 0.00 0.26 0.11 0.09 0.25 0.16 0.00 0.08 0.02 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.01 -0.01 -0.00 -0.00 -0.01 -0.00 0.03 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4338 3897 3659 5351 6999 4872 3679 4501 3720 4057 4847 4965 5052 5112 4499 2851 4321 5479 1911 532 12838 1309 3086 15790 268 7123 1291 381 660 3155 7552 2210 2943 6910 3604 5713 4250 4959 4530 4217 5039 6157 4243 4981 5306 5500 5263 5081 5083 5045 ]
C [ 4424 3316 4791 5825 3873 3718 3067 4567 7634 6514 5794 5252 4773 4325 4871 6086 3948 2087 14737 18262 1064 10744 7114 492 73 145 666 204 1279 13070 1619 9393 5974 4391 3776 3520 3584 5137 5970 6926 5807 4011 5085 4346 4260 4323 4331 4540 4784 4712 ]
G [ 4669 6496 6279 3443 4385 4312 4069 4189 2970 3416 4119 4350 4256 3794 4541 2879 6305 8017 1351 245 2509 6586 1491 1787 18791 11776 10899 18356 15643 1072 8826 5380 2077 5500 4836 4097 7688 4932 4752 3155 3339 4913 4997 5060 4831 4304 4361 5110 4978 4913 ]
T [ 5821 5543 4523 4633 3995 6350 8437 5995 4928 5265 4492 4685 5171 6021 5341 7436 4678 3669 1253 213 2841 613 7561 1183 120 208 6396 311 1670 1955 1255 2269 8258 2451 7036 5922 3730 4224 4000 4954 5067 4171 4927 4865 4855 5125 5297 4521 4407 4582 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.01 -0.04 -0.03 0.02 -0.02 -0.06 0.05 -0.04 -0.03 0.13 -0.08 0.06 -0.10 -0.09 -0.09 -0.03 0.02 -0.04 -0.04 0.04 -0.03 0.01 -0.01 -0.00 ]
C [ 0.04 0.02 0.01 0.03 0.08 0.05 -0.02 0.18 0.27 -0.03 0.17 0.08 -0.02 -0.03 -0.09 -0.00 -0.04 -0.04 0.18 -0.03 0.09 0.06 0.04 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.02 0.02 -0.00 0.06 0.09 -0.03 -0.03 0.10 0.08 -0.03 0.04 0.27 0.20 0.16 0.26 0.19 -0.02 0.18 0.07 -0.01 0.04 0.03 0.01 0.06 0.02 ]
T [ -0.01 -0.00 0.01 0.01 0.03 -0.02 -0.03 -0.07 -0.12 -0.04 -0.09 0.08 -0.05 -0.06 -0.10 0.03 -0.07 0.00 -0.04 -0.09 -0.03 0.04 -0.06 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 413

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 129

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000132.1 CTCF ENCSR068DJS middle frontal area 46 Homo sapiens MA0139.2
BP000133.1 CTCF ENCSR068HEE left ventricle myocardium inferior Homo sapiens MA0139.2
BP000134.1 CTCF ENCSR071XWO gastrocnemius medialis Homo sapiens MA0139.2
BP000135.1 CTCF ENCSR072EUE OCI-LY1 Homo sapiens MA0139.2
BP000136.1 CTCF ENCSR073BPG middle frontal area 46 Homo sapiens MA0139.2
BP000137.1 CTCF ENCSR073TPC esophagus muscularis mucosa Homo sapiens MA0139.2
BP000138.1 CTCF ENCSR074SFL esophagus muscularis mucosa Homo sapiens MA0139.2
BP000139.1 CTCF ENCSR075NRV B cell Homo sapiens MA0139.2
BP000140.1 CTCF ENCSR079YAP tibial artery Homo sapiens MA0139.2
BP000141.1 CTCF ENCSR084RDK DOHH2 Homo sapiens MA0139.2
Showing 10 profiles of page 14 from 45 pages