Detailed information of deep learning profile BP000004.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in endothelial cell of umbilical vein using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000004.1
Cell line/tissue: endothelial cell of umbilical vein
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000ALA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.03 -0.00 -0.01 -0.00 -0.00 -0.01 -0.01 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.02 0.08 0.00 0.16 0.25 0.09 0.11 0.26 0.00 -0.00 0.02 0.01 -0.00 -0.00 0.03 0.02 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 0.00 0.13 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.03 0.09 0.00 0.26 0.14 -0.00 0.01 0.02 0.00 ]
T [ -0.01 0.01 -0.00 -0.00 0.01 -0.01 -0.00 -0.00 -0.01 0.02 -0.00 0.11 -0.01 -0.00 0.04 -0.00 -0.00 0.01 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4582 4407 4521 5297 5125 4855 4865 4927 4171 5067 4954 4000 4224 3730 5922 7036 2451 8258 2269 1255 1955 1670 311 6396 208 120 1183 7561 613 2841 213 1253 3669 4678 7436 5341 6021 5171 4685 4492 5265 4928 5995 8437 6350 3995 4633 4523 5543 5821 ]
C [ 4913 4978 5110 4361 4304 4831 5060 4997 4913 3339 3155 4752 4932 7688 4097 4836 5500 2077 5380 8826 1072 15643 18356 10899 11776 18791 1787 1491 6586 2509 245 1351 8017 6305 2879 4541 3794 4256 4350 4119 3416 2970 4189 4069 4312 4385 3443 6279 6496 4669 ]
G [ 4712 4784 4540 4331 4323 4260 4346 5085 4011 5807 6926 5970 5137 3584 3520 3776 4391 5974 9393 1619 13070 1279 204 666 145 73 492 7114 10744 1064 18262 14737 2087 3948 6086 4871 4325 4773 5252 5794 6514 7634 4567 3067 3718 3873 5825 4791 3316 4424 ]
T [ 5045 5083 5081 5263 5500 5306 4981 4243 6157 5039 4217 4530 4959 4250 5713 3604 6910 2943 2210 7552 3155 660 381 1291 7123 268 15790 3086 1309 12838 532 1911 5479 4321 2851 4499 5112 5052 4965 4847 4057 3720 4501 3679 4872 6999 5351 3659 3897 4338 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.06 0.04 -0.03 -0.09 -0.04 0.00 -0.07 0.03 -0.10 -0.06 -0.05 0.08 -0.09 -0.04 -0.12 -0.07 -0.03 -0.02 0.03 0.01 0.01 -0.00 -0.01 ]
C [ 0.02 0.06 0.01 0.03 0.04 -0.01 0.07 0.18 -0.02 0.19 0.26 0.16 0.20 0.27 0.04 -0.03 0.08 0.10 -0.03 -0.03 0.09 0.06 -0.00 0.02 0.02 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.04 0.06 0.09 -0.03 0.18 -0.04 -0.04 -0.00 -0.09 -0.03 -0.02 0.08 0.17 -0.03 0.27 0.18 -0.02 0.05 0.08 0.03 0.01 0.02 0.04 ]
T [ -0.00 -0.01 0.01 -0.03 0.04 -0.04 -0.04 0.02 -0.03 -0.09 -0.09 -0.10 0.06 -0.08 0.13 -0.03 -0.04 0.05 -0.06 -0.02 0.02 -0.03 -0.04 -0.01 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 413

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 129

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages