Detailed information of deep learning profile BP000141.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in DOHH2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000141.1
Cell line/tissue: DOHH2
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR084RDK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.06 -0.00 0.12 0.17 0.06 0.09 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.04 0.00 0.09 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 0.00 0.16 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4421 4251 4422 4680 4692 4449 4477 4502 4192 4782 4537 3881 4067 3785 5555 6670 2772 7733 2624 1542 1962 1626 410 5585 375 262 1988 6928 1042 3813 522 1537 3534 4489 6118 4817 5444 4736 4556 4493 4840 4607 5517 6904 5712 4156 4531 4338 5041 5178 ]
C [ 5227 5249 5135 4813 4759 5214 5133 5128 4815 3963 3817 5274 5018 7306 4388 4702 5585 2232 4741 9289 1143 15171 17985 11030 12711 18196 2431 2330 6803 2917 811 1981 7752 5794 3506 4687 4137 4604 4578 4284 3960 3633 4374 4642 4570 4592 4106 6022 6070 5064 ]
G [ 4731 4829 4672 4809 4782 4479 4595 5115 4629 5596 6398 5595 5046 3881 4075 4199 4544 6016 9597 1903 12683 1449 200 721 175 117 666 6444 9127 1972 16494 13125 2650 4533 6318 5205 4841 5078 5299 5612 6329 6993 4709 3702 4103 4434 5569 4875 3857 4544 ]
T [ 4631 4681 4781 4708 4777 4868 4805 4265 5374 4669 4258 4260 4879 4038 4992 3439 6109 3029 2048 6276 3222 764 415 1674 5749 435 13925 3308 2038 10308 1183 2367 5074 4194 3068 4301 4588 4592 4577 4621 3881 3777 4410 3762 4625 5828 4804 3775 4042 4224 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.03 -0.03 0.03 -0.01 -0.06 -0.03 0.01 -0.04 0.02 -0.07 -0.04 -0.02 0.07 -0.05 -0.01 -0.08 -0.04 -0.02 -0.00 0.02 0.01 0.01 ]
C [ 0.01 0.03 -0.00 0.02 0.02 -0.01 0.03 0.13 -0.02 0.14 0.18 0.11 0.14 0.19 0.02 -0.00 0.05 0.07 -0.03 -0.03 0.06 0.03 -0.00 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.02 0.14 -0.04 -0.05 -0.01 -0.07 -0.03 0.00 0.05 0.12 -0.01 0.18 0.12 -0.01 0.04 0.05 0.02 0.01 ]
T [ 0.01 -0.00 0.02 -0.01 0.03 -0.01 -0.02 0.02 -0.02 -0.05 -0.05 -0.06 0.04 -0.05 0.09 -0.01 -0.01 0.04 -0.03 -0.00 0.02 -0.01 -0.02 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1103

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages