Detailed information of deep learning profile BP000412.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000412.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR876UZD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.02 -0.00 0.03 -0.00 0.00 -0.00 -0.00 0.00 0.01 -0.00 0.00 -0.00 0.01 -0.00 ]
C [ -0.00 0.01 0.01 -0.00 0.02 0.08 -0.00 0.14 0.19 0.06 0.08 0.20 0.00 -0.00 0.01 ]
G [ 0.00 0.00 0.01 0.01 0.05 -0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.06 ]
T [ 0.01 -0.00 0.02 -0.00 -0.00 0.02 -0.00 0.00 0.00 -0.00 0.02 0.00 0.11 -0.01 -0.00 ]

Frequency matrix

       
A [ 11 11 13 2 7 10 12 16 16 13 15 14 10 10 10 12 13 9 15 14 14 11 8 7 9 9 14 11 7 8 4 6 20 13 9 15 25 1 37 4 0 5 4 2 19 1 1 4 9 1 ]
C [ 18 19 18 23 20 23 20 24 14 18 22 16 17 24 25 31 28 25 30 30 27 35 37 32 35 38 35 35 42 34 45 43 21 28 38 15 23 22 3 22 35 2 57 60 40 38 60 1 7 24 ]
G [ 20 19 13 14 16 14 14 11 20 15 13 16 15 15 13 10 13 12 11 12 9 7 9 11 9 3 0 3 6 8 7 6 7 12 9 12 5 14 16 33 1 48 1 0 2 1 0 2 37 33 ]
T [ 13 13 18 23 19 15 16 11 12 16 12 16 20 13 14 9 8 16 6 6 12 9 8 12 9 12 13 13 7 12 6 7 14 9 6 20 9 25 6 3 26 7 0 0 1 22 1 55 9 4 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.02 0.04 -0.06 0.05 -0.01 -0.08 -0.03 0.01 -0.06 0.04 -0.09 -0.06 -0.03 0.09 -0.08 ]
C [ 0.00 0.03 -0.01 0.02 0.03 -0.03 0.03 0.14 -0.05 0.15 0.19 0.11 0.13 0.20 0.02 -0.03 0.05 ]
G [ 0.02 0.01 0.01 0.01 0.04 0.06 0.09 -0.05 0.16 -0.05 -0.08 -0.01 -0.09 -0.05 -0.01 0.05 0.12 ]
T [ 0.01 -0.00 0.02 -0.03 0.04 -0.02 -0.03 0.04 -0.02 -0.06 -0.06 -0.08 0.07 -0.08 0.12 -0.01 -0.03 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 20176

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000271.1 CTCF ENCSR450DXU HCT116 Homo sapiens MA0139.2
BP000272.1 CTCF ENCSR450FRI esophagus squamous epithelium Homo sapiens MA0139.2
BP000273.1 CTCF ENCSR452KYY middle frontal area 46 Homo sapiens MA0139.2
BP000274.1 CTCF ENCSR458PYQ type B pancreatic cell Homo sapiens MA0139.2
BP000275.1 CTCF ENCSR460LGH C4-2B Homo sapiens MA0139.2
BP000276.1 CTCF ENCSR461HOC heart left ventricle Homo sapiens MA0139.2
BP000277.1 CTCF ENCSR461VHZ astrocyte Homo sapiens MA0139.2
BP000278.1 CTCF ENCSR463XCZ upper lobe of left lung Homo sapiens MA0139.2
BP000279.1 CTCF ENCSR464DKE Loucy Homo sapiens MA0139.2
BP000280.1 CTCF ENCSR466TNQ spleen Homo sapiens MA0139.2
Showing 10 profiles of page 28 from 45 pages