Detailed information of deep learning profile BP000275.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in C4-2B using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000275.1
Cell line/tissue: C4-2B
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR460LGH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 0.00 0.12 0.18 0.06 0.09 0.20 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.03 0.00 0.09 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 0.00 0.19 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.02 -0.00 0.07 -0.01 -0.00 0.02 -0.00 -0.00 0.01 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 5395 5052 5011 5697 5526 5267 5346 5499 4905 5516 5426 4625 4937 4495 6409 7637 3323 8666 3177 1721 2255 2142 506 7126 321 289 1735 8520 1003 4007 365 1736 4181 5169 7626 5820 6638 5698 5335 5173 5757 5535 6468 8282 6692 4916 5288 4989 5978 6187 ]
C [ 4848 5097 5070 4688 4715 4842 4969 5179 4909 3924 3611 5130 4882 7065 4196 4913 5471 2342 5354 9049 1198 15824 19407 10904 13198 19859 2271 1876 7245 2538 303 1679 7816 5844 3110 4539 3896 4261 4439 4291 3639 3278 4291 4218 4400 4491 3816 6078 6105 4806 ]
G [ 4698 4828 4647 4514 4523 4490 4617 4858 4265 5528 6420 5721 5006 4051 3997 3855 4670 5800 9404 1862 13183 1595 194 677 167 91 543 6684 10290 1405 19118 14739 2476 4583 6395 5335 4624 5134 5328 5737 6399 7318 4731 3653 3969 4173 5511 4935 3681 4424 ]
T [ 5624 5588 5837 5666 5801 5966 5633 5029 6486 5597 5108 5089 5740 4954 5963 4160 7101 3757 2630 7933 3929 1004 458 1858 6879 326 16016 3485 2027 12615 779 2411 6092 4969 3434 4871 5407 5472 5463 5364 4770 4434 5075 4412 5504 6985 5950 4563 4801 5148 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.03 -0.04 0.03 -0.01 -0.06 -0.02 0.01 -0.04 0.03 -0.07 -0.04 -0.03 0.06 -0.05 -0.02 -0.07 -0.04 -0.01 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.02 0.04 0.01 0.03 0.03 -0.00 0.05 0.14 -0.01 0.14 0.19 0.12 0.15 0.20 0.03 -0.01 0.06 0.08 -0.02 -0.02 0.06 0.04 0.00 0.02 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.04 0.05 0.08 -0.00 0.14 -0.02 -0.03 0.01 -0.06 -0.02 0.00 0.06 0.13 -0.00 0.20 0.13 -0.01 0.05 0.06 0.02 0.01 0.02 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.02 -0.05 -0.05 -0.06 0.05 -0.05 0.09 -0.02 -0.03 0.04 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 363

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 356

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 223

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 146

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages