Detailed information of deep learning profile BP000278.1

This page shows detailed deep learning-derived predictions and motifs for CTCF in upper lobe of left lung using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000278.1
Cell line/tissue: upper lobe of left lung
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR463XCZ
Model: BPNet
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Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.16 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.06 0.05 0.15 0.10 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

A [ 4409 3853 3681 5383 7002 4841 3651 4437 3605 4000 4689 4801 5036 5045 4375 2808 4279 5448 1876 572 12700 1275 3164 15974 260 7214 1383 461 752 3254 7642 2194 2902 6793 3600 5739 4334 4921 4527 4191 5152 6155 4219 4949 5204 5534 5075 4999 4989 5008 ]
C [ 4592 3420 4976 6109 4000 3754 3210 4750 7979 6854 6027 5486 5060 4564 5135 6458 4221 2144 15149 18584 933 11014 7292 552 117 235 957 363 1367 13177 1558 9354 6212 4771 4041 3696 3605 5259 6258 7170 6008 4078 5288 4621 4476 4462 4492 4653 4899 4830 ]
G [ 4835 6702 6497 3498 4563 4642 4159 4351 3040 3441 4295 4587 4352 3924 4760 3001 6380 8356 1237 214 3066 6659 1519 1886 18994 11844 10843 18295 15711 1145 9091 5716 2398 5574 5108 4362 7955 5208 4834 3176 3425 5218 5147 5265 5011 4424 4645 5306 5230 5164 ]
T [ 5705 5566 4387 4551 3976 6304 8521 6003 4917 5246 4530 4667 5093 6008 5271 7274 4661 3593 1279 171 2842 593 7566 1129 170 248 6358 422 1711 1965 1250 2277 8029 2403 6792 5744 3647 4153 3922 5004 4956 4090 4887 4706 4850 5121 5329 4583 4423 4539 ]

Hypothetical CWM

A [ -0.00 0.00 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.04 0.04 -0.02 -0.02 0.08 -0.05 0.04 -0.06 -0.05 -0.05 -0.01 0.02 -0.02 -0.02 0.02 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.04 -0.01 0.11 0.17 -0.03 0.11 0.05 -0.01 -0.02 -0.06 0.00 -0.03 -0.02 0.11 -0.01 0.05 0.04 0.02 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.01 -0.00 0.03 0.05 -0.02 -0.02 0.07 0.04 -0.02 0.02 0.16 0.12 0.09 0.15 0.11 -0.02 0.11 0.04 -0.01 0.02 0.02 -0.00 0.03 0.01 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.04 -0.07 -0.03 -0.06 0.05 -0.04 -0.04 -0.07 0.02 -0.04 0.00 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 392

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 75

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages