Detailed information of deep learning profile BP000274.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in type B pancreatic cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000274.1
Cell line/tissue: type B pancreatic cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR458PYQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 0.01 0.03 0.00 0.08 0.13 0.06 0.09 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.02 0.00 0.05 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.02 0.07 -0.00 0.19 0.11 -0.00 0.01 0.02 0.00 ]
T [ 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.08 -0.00 -0.00 0.03 -0.00 -0.00 0.01 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4856 4551 4623 4948 4998 4779 4740 4882 4623 4888 4819 4280 4426 4258 5434 5954 3736 6621 3532 2631 2790 2284 1409 4672 482 162 1311 7488 595 3819 156 868 3620 4448 7016 5140 6181 5384 4671 4509 4965 4620 5750 8499 5952 4000 4522 4246 5658 5857 ]
C [ 4871 5012 5002 4689 4779 5039 5114 5107 5009 4410 4128 5112 5189 6571 4803 5194 5572 3531 5115 7678 2260 12512 16202 11498 13890 19074 2198 1305 6736 2400 138 1028 7833 6132 2613 4696 3840 4180 4521 4080 3227 2797 4309 4048 4516 4364 3429 6576 6503 4597 ]
G [ 4864 4947 4844 4692 4683 4664 4673 4825 4346 5127 5781 5410 4765 4185 3985 4038 4387 5295 7335 3165 9897 2610 936 1080 214 86 390 7784 10909 924 18716 16038 2344 4756 6989 5614 4557 5135 5308 6119 7073 8688 4798 3351 4055 4149 6200 5028 3345 4561 ]
T [ 4932 5013 5054 5194 5063 5041 4996 4709 5545 5098 4795 4721 5143 4509 5301 4337 5828 4076 3541 6049 4576 2117 976 2273 4937 201 15624 2946 1283 12380 513 1589 5726 4187 2905 4073 4945 4824 5023 4815 4258 3418 4666 3625 5000 7010 5372 3673 4017 4508 ]

Hypothetical CWM

   
A [ 0.01 -0.02 0.01 -0.01 -0.04 -0.02 -0.00 -0.04 0.00 -0.06 -0.04 -0.05 0.06 -0.07 -0.03 -0.09 -0.05 -0.02 -0.01 0.02 0.01 0.01 0.01 0.00 ]
C [ 0.02 0.02 0.01 0.03 0.08 -0.00 0.10 0.14 0.10 0.13 0.17 0.03 -0.02 0.05 0.07 -0.03 -0.03 0.06 0.04 0.00 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.02 0.03 0.05 0.01 0.09 -0.01 -0.03 -0.00 -0.07 -0.02 -0.01 0.06 0.12 -0.02 0.19 0.13 -0.02 0.04 0.06 0.03 0.01 0.02 0.03 ]
T [ -0.01 0.02 -0.01 -0.01 0.01 -0.01 -0.04 -0.05 -0.06 0.03 -0.06 0.09 -0.02 -0.03 0.04 -0.04 -0.01 0.02 -0.02 -0.03 -0.00 0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1157

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 336

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 258

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 222

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages