Detailed information of deep learning profile BP000276.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart left ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000276.1
Cell line/tissue: heart left ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR461HOC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.09 0.15 0.04 0.06 0.15 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.15 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4226 4335 4217 3999 4135 4819 4652 4403 4209 4413 3816 4742 4538 3619 3841 3236 5379 6373 2083 7714 1901 1051 1609 1570 309 6061 244 195 1405 6491 760 2861 253 1411 3329 4370 6444 4785 5295 4591 4289 4199 4658 4506 5197 7062 5535 3814 4267 4218 ]
C [ 5062 4818 4966 5072 5155 4389 4406 5005 5177 5119 4991 3348 3184 4718 5161 7818 4114 4928 5470 2121 5536 9051 727 15595 17597 9890 11118 17743 2077 1957 6867 3241 345 1688 7817 5961 3091 4707 4002 4432 4548 4296 3654 3363 4551 4355 4634 4547 3823 5917 ]
G [ 4730 4628 4681 4723 4576 4415 4293 4321 4424 5092 4028 5815 6837 6017 4939 3466 3722 3994 4570 5982 9232 1084 13209 782 122 1014 238 127 716 6987 9379 1236 16908 13336 2427 3981 6086 4857 4479 4893 5094 5611 6254 7062 4676 3434 3898 4031 5540 4794 ]
T [ 4427 4664 4581 4651 4579 4822 5094 4716 4635 3821 5610 4540 3886 4091 4504 3925 5230 3150 6322 2628 1776 7259 2900 498 417 1480 6845 380 14247 3010 1439 11107 939 2010 4872 4133 2824 4096 4669 4529 4514 4339 3879 3514 4021 3594 4378 6053 4815 3516 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.01 -0.06 -0.02 0.00 -0.04 0.02 -0.07 -0.03 -0.03 0.05 -0.04 -0.02 -0.06 -0.03 -0.01 -0.01 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.01 0.04 0.00 0.02 0.02 -0.00 0.05 0.12 -0.02 0.11 0.15 0.09 0.11 0.15 0.03 -0.01 0.05 0.07 -0.03 -0.02 0.05 0.04 0.00 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.03 0.04 0.06 -0.02 0.11 -0.03 -0.04 0.01 -0.05 -0.01 -0.00 0.05 0.10 -0.02 0.15 0.10 -0.01 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.05 -0.04 -0.05 0.04 -0.04 0.08 -0.01 -0.02 0.03 -0.02 -0.01 0.02 -0.01 -0.02 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 877

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 239

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 117

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages