Detailed information of deep learning profile BP000272.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in esophagus squamous epithelium using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000272.1
Cell line/tissue: esophagus squamous epithelium
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR450FRI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.15 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.06 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.15 0.06 0.04 0.13 0.08 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3623 3285 3032 4323 5397 4093 3180 3788 3014 3353 3890 3957 3910 4056 3640 2490 3658 4336 1597 287 9982 1230 2711 12506 210 5125 1728 249 953 3335 5594 2219 2854 5197 3147 4363 3522 4061 3768 3545 4113 4743 3651 4014 4200 4243 4116 4256 4025 4049 ]
C [ 3866 2958 4019 4958 3555 3343 2931 4000 6436 5462 4845 4417 4307 3978 4296 5518 3666 2021 12351 15514 935 8255 6163 431 91 214 806 95 1556 9609 1705 7069 4739 3689 3497 3390 3209 4221 4718 5352 4611 3540 4169 3872 3800 3791 3911 3884 4079 4085 ]
G [ 3998 5304 5454 3136 3811 3875 3650 3657 2729 3079 3666 3871 3750 3312 3843 2574 4818 6657 1120 158 2064 6053 1494 1900 15622 10431 8428 15530 12165 1282 7361 4607 2407 4752 4305 3777 6207 4362 4153 3177 3330 4274 4366 4359 4301 3951 3976 4274 4324 4167 ]
T [ 4600 4540 3582 3670 3324 4776 6326 4642 3908 4193 3686 3842 4120 4741 4308 5505 3945 3073 1019 128 3106 549 5719 1250 164 317 5125 213 1413 1861 1427 2192 6087 2449 5138 4557 3149 3443 3448 4013 4033 3530 3901 3842 3786 4102 4084 3673 3659 3786 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.03 -0.03 -0.02 0.08 -0.05 0.03 -0.05 -0.04 -0.04 -0.01 0.02 -0.01 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.00 0.01 0.04 0.03 -0.02 0.10 0.15 -0.04 0.10 0.04 -0.02 -0.03 -0.07 -0.01 -0.04 -0.03 0.09 -0.02 0.04 0.02 0.02 0.01 0.01 0.01 0.01 ]
G [ 0.00 0.01 -0.01 0.02 0.04 -0.03 -0.04 0.06 0.04 -0.03 0.01 0.15 0.11 0.08 0.13 0.09 -0.02 0.09 0.03 -0.01 0.02 0.01 0.00 0.03 0.01 ]
T [ 0.01 0.01 0.02 -0.00 -0.01 -0.04 -0.07 -0.02 -0.06 0.05 -0.04 -0.04 -0.06 0.02 -0.03 0.00 -0.02 -0.04 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3264

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 965

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 843

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 298

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 259

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages