Detailed information of deep learning profile BP000280.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in spleen using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000280.1
Cell line/tissue: spleen
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR466TNQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.10 0.15 0.05 0.07 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 -0.00 0.16 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3912 3805 3946 4992 4635 4337 4273 4353 3410 4435 4398 3329 3567 3115 5114 6107 1772 7432 1579 853 1560 1421 225 6158 151 98 816 6686 467 2027 133 1056 3122 4119 7072 4721 5551 4378 3983 3798 4715 4392 5326 7844 5866 3342 3998 3918 4906 5117 ]
C [ 4657 4735 5027 3957 3777 4475 4775 4599 4737 2583 2447 4158 4721 7534 3849 4824 5092 1809 5392 8686 613 14985 16882 9806 10322 17158 1284 1262 5800 2518 145 1069 7654 6163 2567 4446 3488 3813 4039 3813 3007 2687 3977 3896 4171 4221 3134 6099 6409 4493 ]
G [ 4479 4465 4100 3935 3867 4009 4042 4989 3503 5862 7102 5898 4869 3022 3161 3479 4224 5846 8835 853 12856 701 143 671 135 81 479 6846 10315 794 16874 13773 1773 3589 5544 4231 3793 4543 5093 5621 6281 7406 4198 2638 3158 3569 5654 4508 2986 4160 ]
T [ 4469 4512 4444 4633 5238 4696 4427 3576 5867 4637 3570 4132 4360 3846 5393 3107 6429 2430 1711 7125 2488 410 267 882 6909 180 14938 2723 935 12178 365 1619 4968 3646 2334 4119 4685 4783 4402 4285 3514 3032 4016 3139 4322 6385 4731 2992 3216 3747 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.05 -0.03 0.01 -0.04 0.02 -0.07 -0.04 -0.04 0.06 -0.05 -0.03 -0.08 -0.03 -0.01 -0.00 0.02 0.01 0.02 0.01 0.00 ]
C [ 0.01 0.03 -0.00 0.02 0.03 -0.00 0.04 0.12 -0.02 0.12 0.15 0.09 0.12 0.16 0.02 -0.01 0.05 0.08 -0.02 -0.02 0.05 0.04 -0.01 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.03 0.06 -0.03 0.12 -0.03 -0.03 0.00 -0.07 -0.02 -0.00 0.05 0.10 -0.04 0.16 0.10 -0.02 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.05 -0.04 -0.06 0.05 -0.04 0.09 -0.01 -0.02 0.04 -0.02 -0.00 0.02 -0.01 -0.02 0.00 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 460

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 29

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages