Detailed information of deep learning profile BP000277.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in astrocyte using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000277.1
Cell line/tissue: astrocyte
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR461VHZ
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.09 0.14 0.05 0.07 0.15 -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.08 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 0.06 -0.00 0.15 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.08 -0.00 -0.00 0.03 -0.00 -0.00 0.01 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 1080 1097 1092 1345 1265 1198 1201 1178 969 1186 1173 949 972 920 1391 1618 662 1880 582 364 487 429 157 1485 83 29 215 1859 134 582 57 266 844 1112 1881 1273 1460 1221 1092 1030 1257 1134 1520 2372 1562 867 1112 993 1451 1412 ]
C [ 1327 1350 1391 1102 1042 1188 1313 1256 1372 893 780 1207 1319 2079 1095 1356 1437 583 1400 2283 287 3903 4490 2867 3151 4758 381 346 1587 683 40 253 2140 1687 673 1288 971 1083 1155 1059 831 691 1107 1012 1211 1121 790 1869 1776 1272 ]
G [ 1251 1241 1144 1182 1195 1137 1174 1430 975 1532 1864 1595 1367 867 900 996 1143 1682 2318 404 3383 286 99 209 50 28 140 1974 2889 211 4682 3928 484 1050 1682 1223 1121 1357 1435 1604 1880 2238 1198 699 832 970 1643 1218 792 1179 ]
T [ 1221 1191 1252 1250 1377 1356 1191 1015 1563 1268 1062 1128 1221 1013 1493 909 1637 734 579 1828 722 261 133 318 1595 64 4143 700 269 3403 100 432 1411 1030 643 1095 1327 1218 1197 1186 911 816 1054 796 1274 1921 1334 799 860 1016 ]

Hypothetical CWM

   
A [ 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.03 0.00 -0.04 0.02 -0.07 -0.04 -0.05 0.05 -0.06 -0.04 -0.07 -0.04 -0.01 -0.01 0.02 0.01 0.01 0.01 0.00 -0.00 0.00 0.00 0.01 0.04 0.01 -0.01 ]
C [ -0.00 0.01 0.02 -0.00 0.03 0.10 -0.02 0.11 0.15 0.09 0.12 0.16 0.01 -0.02 0.05 0.08 -0.02 -0.03 0.05 0.04 -0.01 0.02 0.01 0.01 0.01 0.01 -0.00 -0.02 -0.00 -0.00 0.01 0.00 ]
G [ 0.01 0.01 0.01 0.02 0.04 -0.02 0.10 -0.03 -0.03 -0.00 -0.06 -0.02 -0.00 0.05 0.10 -0.03 0.16 0.12 -0.02 0.04 0.06 0.02 0.01 0.01 0.02 0.02 0.03 0.05 -0.00 -0.03 -0.01 -0.01 ]
T [ 0.01 -0.01 0.02 -0.01 -0.02 0.01 -0.01 -0.04 -0.06 -0.06 0.03 -0.05 0.09 -0.02 -0.01 0.04 -0.03 -0.01 0.03 -0.02 -0.02 0.00 0.01 0.00 0.01 0.00 -0.00 -0.01 0.01 -0.01 0.01 0.02 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages