Detailed information of deep learning profile BP000273.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000273.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR452KYY
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.10 0.15 0.05 0.06 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.09 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.07 -0.00 0.16 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4683 4613 4718 5955 5684 5310 5097 5210 4095 5498 5228 4087 4294 3802 6159 7377 2003 8685 1839 922 1792 1712 266 7696 128 119 888 8187 532 2102 145 1260 3638 4818 8877 5743 6718 5351 4666 4618 5776 5300 6543 9722 6978 4027 4908 4487 6085 6095 ]
C [ 5227 5293 5696 4354 4163 4804 5379 5237 5511 2617 2479 4440 5302 8770 4126 5440 5614 2006 6381 9694 662 17397 19730 11389 11663 20028 1420 1264 6413 2664 128 1050 8965 7482 2662 5118 3942 4361 4485 4233 3269 2811 4407 4246 4710 4793 3222 7262 7221 5031 ]
G [ 5185 5017 4790 4430 4150 4573 4738 5789 3684 6909 8464 7016 5787 3349 3674 3949 4867 6947 10194 923 15162 715 117 531 105 61 460 7767 12467 726 19802 16181 1910 3912 6193 4699 4161 5158 5855 6484 7276 8744 4732 2815 3517 3952 6575 5090 3192 4766 ]
T [ 5338 5510 5229 5694 6436 5746 5219 4197 7143 5409 4262 4890 5050 4512 6474 3667 7949 2795 2019 8894 2817 609 320 817 8537 225 17665 3215 1021 14941 358 1942 5920 4221 2701 4873 5612 5563 5427 5098 4112 3578 4751 3650 5228 7661 5728 3594 3935 4541 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.02 -0.03 0.03 -0.01 -0.06 -0.02 0.00 -0.04 0.02 -0.07 -0.04 -0.04 0.06 -0.05 -0.03 -0.08 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.01 0.03 -0.00 0.02 0.03 0.00 0.05 0.12 -0.02 0.12 0.15 0.10 0.12 0.16 0.03 -0.01 0.05 0.08 -0.02 -0.02 0.05 0.04 -0.00 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.03 0.06 -0.02 0.12 -0.03 -0.03 0.01 -0.05 -0.01 0.00 0.05 0.11 -0.03 0.17 0.11 -0.01 0.04 0.06 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.04 -0.05 -0.07 0.05 -0.04 0.09 -0.02 -0.03 0.04 -0.02 -0.01 0.02 -0.02 -0.02 0.00 0.01 0.01 0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages