Detailed information of deep learning profile BP000271.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000271.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR450DXU
Model: BPNet
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Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 0.00 0.08 0.13 0.05 0.07 0.15 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ -0.00 0.00 0.01 0.02 0.00 0.06 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 0.00 0.15 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4333 4197 4266 4726 4709 4394 4436 4458 4088 4500 4574 3792 3905 3686 5190 5886 2881 6827 2588 1735 2202 1831 880 4937 436 201 1204 6995 644 3119 242 1097 3248 4264 6569 4755 5511 4935 4210 4094 4610 4219 5419 8047 5545 3540 4243 3906 5259 5326 ]
C [ 4413 4536 4601 4137 3958 4445 4554 4557 4342 3502 3235 4509 4460 6443 3993 4489 4961 2399 4603 7567 1486 12734 15543 10064 11588 16965 1771 1243 6035 1993 276 1184 7092 5518 2593 4027 3515 3696 3983 3705 2898 2673 3757 3558 4074 3854 3002 6106 5865 4163 ]
G [ 4301 4186 4121 4112 4116 4039 4033 4448 3902 4809 5525 4980 4455 3422 3353 3602 3937 5131 7823 2163 10400 1648 539 796 188 126 426 6622 9456 1177 16336 13564 1884 4015 5824 4840 4101 4460 4836 5391 6256 7534 4088 2817 3345 3570 5498 4291 2913 4049 ]
T [ 4551 4679 4610 4623 4815 4720 4575 4135 5266 4787 4264 4317 4778 4047 5062 3621 5819 3241 2584 6133 3510 1385 636 1801 5386 306 14197 2738 1463 11309 744 1753 5374 3801 2612 3976 4471 4507 4569 4408 3834 3172 4334 3176 4634 6634 4855 3295 3561 4060 ]

Hypothetical CWM

   
A [ 0.01 0.02 -0.02 0.02 -0.01 -0.05 -0.02 -0.00 -0.04 0.01 -0.05 -0.04 -0.03 0.05 -0.06 -0.02 -0.07 -0.04 -0.02 -0.00 0.02 0.01 0.01 0.00 -0.00 ]
C [ -0.00 0.01 0.02 -0.01 0.02 0.08 -0.02 0.09 0.14 0.08 0.11 0.15 0.01 -0.03 0.04 0.05 -0.03 -0.03 0.04 0.03 -0.01 0.01 0.00 0.01 0.00 ]
G [ 0.00 0.00 0.01 0.02 0.04 -0.02 0.09 -0.03 -0.04 -0.01 -0.07 -0.02 -0.02 0.04 0.09 -0.02 0.16 0.11 -0.02 0.03 0.04 0.02 0.00 0.01 0.01 ]
T [ 0.01 -0.01 0.02 -0.01 -0.01 0.01 -0.01 -0.04 -0.04 -0.04 0.03 -0.05 0.08 -0.02 -0.02 0.03 -0.03 -0.01 0.02 -0.02 -0.03 -0.00 0.00 0.00 0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages