Detailed information of deep learning profile BP000279.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in Loucy using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000279.1
Cell line/tissue: Loucy
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR464DKE
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 0.00 0.10 0.15 0.05 0.08 0.16 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 0.00 0.15 0.08 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5130 4935 4931 5427 5226 5011 5123 5182 4870 5391 5057 4397 4810 4279 6285 7267 3268 8141 3134 1843 2372 2024 603 6208 454 312 2037 7755 1149 4407 521 1670 3972 4932 7037 5320 6104 5255 5108 5089 5439 5270 6082 7973 6215 4638 5144 4765 5721 5827 ]
C [ 5378 5555 5335 4916 5009 5387 5369 5523 5328 4211 4058 5448 5464 7770 4620 5170 5903 2530 5317 9310 1489 15918 19448 11817 13775 19988 2790 2104 7303 2539 646 1906 8177 6323 3625 5057 4439 4914 4839 4619 3965 3663 4698 4813 4799 4711 4143 6576 6498 5330 ]
G [ 4994 5037 5147 5019 5024 4967 4948 5295 4702 5826 6836 6019 5402 4252 4212 4506 4823 6493 9760 2344 13042 1821 282 694 194 108 550 7336 10179 1935 18304 14653 2832 4829 6637 5481 5049 5484 5705 6009 6905 7763 4961 3879 4354 4718 6024 5155 4016 4732 ]
T [ 5330 5305 5419 5470 5573 5467 5392 4832 5932 5404 4881 4968 5156 4531 5715 3889 6838 3668 2621 7335 3929 1069 499 2113 6409 424 15455 3637 2201 11951 1361 2603 5851 4748 3533 4974 5240 5179 5180 5115 4523 4136 5091 4167 5464 6765 5521 4336 4597 4943 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.04 -0.02 0.01 -0.03 0.02 -0.06 -0.03 -0.02 0.06 -0.04 -0.01 -0.07 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.03 -0.00 0.01 0.02 -0.01 0.03 0.11 -0.01 0.12 0.15 0.10 0.12 0.17 0.03 -0.01 0.04 0.05 -0.03 -0.02 0.05 0.03 -0.01 0.01 0.00 0.01 0.00 ]
G [ 0.01 0.00 0.00 0.01 0.02 0.04 0.06 -0.01 0.11 -0.03 -0.04 -0.02 -0.07 -0.04 -0.01 0.04 0.10 -0.02 0.16 0.10 -0.01 0.03 0.04 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.01 0.03 -0.01 -0.02 0.02 -0.01 -0.05 -0.05 -0.05 0.04 -0.04 0.08 -0.00 -0.01 0.04 -0.03 -0.01 0.02 -0.01 -0.02 -0.00 0.01 0.01 0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages