Detailed information of deep learning profile BP000395.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in right lobe of liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000395.1
Cell line/tissue: right lobe of liver
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR837OOH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.11 0.17 0.06 0.08 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.03 -0.00 0.09 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.17 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.02 -0.00 0.07 -0.01 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4527 4338 4486 4985 4917 4635 4585 4805 4259 5015 4844 4034 4182 3662 5836 6694 2719 7875 2533 1378 1970 1788 428 6278 324 236 1713 7160 846 3489 372 1524 3677 4650 6569 4961 5608 4937 4625 4543 4948 4911 5579 7355 5829 4159 4595 4495 5313 5396 ]
C [ 5243 5529 5412 4838 4863 5324 5545 5534 5306 3910 3696 5288 5510 8029 4473 5207 5925 2486 5523 9588 1138 15881 18700 10782 12591 19093 2490 2208 7443 3612 482 1893 8305 6267 3390 4966 4287 4820 4905 4566 4019 3634 4881 4641 4824 4876 4262 6310 6442 5165 ]
G [ 5136 5106 4940 4903 4891 4692 4843 5278 4502 6034 7067 6137 5237 3937 4118 4457 4791 6325 9666 1676 13289 1436 228 1043 274 143 751 7339 9713 1572 17845 14191 2610 4521 6732 5545 4956 5375 5511 6100 6716 7390 4952 3891 4395 4583 5985 5056 4121 4900 ]
T [ 4946 4879 5014 5126 5181 5201 4879 4235 5785 4893 4245 4393 4923 4224 5425 3494 6417 3166 2130 7210 3455 747 496 1749 6663 380 14898 3145 1850 11179 1153 2244 5260 4414 3161 4380 5001 4720 4811 4643 4169 3917 4440 3965 4804 6234 5010 3991 3976 4391 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.01 -0.07 -0.03 0.01 -0.04 0.03 -0.08 -0.05 -0.03 0.06 -0.06 -0.03 -0.08 -0.04 -0.02 -0.01 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.02 0.04 0.00 0.02 0.03 -0.01 0.04 0.13 -0.02 0.14 0.18 0.11 0.14 0.19 0.03 -0.02 0.05 0.07 -0.03 -0.03 0.06 0.04 -0.01 0.01 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.02 0.13 -0.03 -0.05 -0.01 -0.07 -0.03 -0.00 0.06 0.12 -0.02 0.19 0.12 -0.02 0.03 0.05 0.02 0.00 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.03 0.03 -0.02 -0.06 -0.05 -0.07 0.05 -0.06 0.09 -0.03 -0.03 0.04 -0.04 -0.01 0.02 -0.02 -0.03 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 33

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000331.1 CTCF ENCSR619WGF middle frontal area 46 Homo sapiens MA0139.2
BP000332.1 CTCF ENCSR647SQF mesothelial cell of epicardium Homo sapiens MA0139.2
BP000333.1 CTCF ENCSR655ECZ vagina Homo sapiens MA0139.2
BP000334.1 CTCF ENCSR661NXJ breast epithelium Homo sapiens MA0139.2
BP000335.1 CTCF ENCSR661XNQ gastroesophageal sphincter Homo sapiens MA0139.2
BP000336.1 CTCF ENCSR666JEF middle frontal area 46 Homo sapiens MA0139.2
BP000337.1 CTCF ENCSR668BTN thoracic aorta Homo sapiens MA0139.2
BP000338.1 CTCF ENCSR671ITY HCT116 Homo sapiens MA0139.2
BP000339.1 CTCF ENCSR673WZL LNCAP Homo sapiens MA0139.2
BP000340.1 CTCF ENCSR676LDQ middle frontal area 46 Homo sapiens MA0139.2
Showing 10 profiles of page 34 from 45 pages