Detailed information of deep learning profile BP000337.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in thoracic aorta using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000337.1
Cell line/tissue: thoracic aorta
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR668BTN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.09 0.14 0.04 0.06 0.15 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 -0.00 0.16 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4387 4302 4439 5248 5057 4754 4644 4835 3990 4977 4904 3834 4036 3625 5634 6625 2286 7811 2150 1265 1853 1631 167 6339 240 159 1163 7273 571 2718 126 1211 3572 4603 7229 5190 5845 4985 4526 4401 5139 4756 5799 8345 6078 3882 4467 4393 5458 5517 ]
C [ 4884 4883 5105 4266 4246 4759 5055 4876 4914 3179 2901 4629 4980 7736 4135 5057 5411 2233 5600 8589 989 15439 18434 10438 11163 18441 1877 1397 6103 2608 144 1183 7948 6109 2759 4608 3714 4088 4262 4018 3248 2880 4263 4018 4438 4359 3290 6266 6330 4633 ]
G [ 4587 4664 4420 4299 4186 4227 4370 5106 3852 5823 7000 6038 5009 3425 3517 3728 4477 5958 8964 1528 12904 1154 74 729 215 75 479 7141 11053 950 18183 14664 2126 3933 6092 4766 4278 4809 5197 5882 6515 7734 4502 3007 3565 3830 5805 4697 3255 4454 ]
T [ 5065 5074 4959 5110 5434 5183 4854 4106 6167 4944 4118 4422 4898 4137 5637 3513 6749 2921 2209 7541 3177 699 248 1417 7305 248 15404 3112 1196 12647 470 1865 5277 4278 2843 4359 5086 5041 4938 4622 4021 3553 4359 3553 4842 6852 5361 3567 3880 4319 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.05 -0.02 0.00 -0.04 0.02 -0.06 -0.04 -0.03 0.05 -0.05 -0.02 -0.07 -0.03 -0.01 -0.00 0.02 0.01 0.01 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.01 0.03 0.10 -0.02 0.10 0.14 0.08 0.11 0.15 0.03 -0.01 0.05 0.07 -0.02 -0.02 0.05 0.03 0.00 0.01 0.01 ]
G [ 0.02 0.01 0.00 0.01 0.03 0.03 0.05 -0.02 0.10 -0.03 -0.03 0.01 -0.05 -0.02 -0.00 0.05 0.11 -0.02 0.17 0.11 -0.01 0.03 0.04 0.02 0.00 ]
T [ 0.00 -0.00 0.01 -0.02 0.02 -0.02 -0.02 0.02 -0.01 -0.04 -0.04 -0.05 0.04 -0.04 0.08 -0.01 -0.02 0.04 -0.03 -0.01 0.02 -0.01 -0.02 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3270

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 116

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages