Detailed information of deep learning profile BP000332.1

  1. Home
  2. Deep Learning Profile > BP000332.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in mesothelial cell of epicardium using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000332.1
Cell line/tissue: mesothelial cell of epicardium
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR647SQF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.09 0.15 0.05 0.07 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 -0.00 ]
G [ 0.00 0.00 0.01 0.02 0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 0.00 0.16 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.08 -0.00 -0.00 0.03 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3489 3431 3482 4084 3891 3686 3650 3782 3104 3737 3722 3112 3178 2807 4390 5092 1997 5979 1911 1125 1563 1215 115 4526 200 82 819 5732 480 2210 120 974 2809 3613 5694 4031 4668 3941 3515 3452 3948 3644 4471 6624 4786 2993 3549 3287 4254 4340 ]
C [ 3766 3798 3966 3321 3230 3707 3905 3797 3780 2656 2455 3723 3858 5796 3150 3758 4247 1840 4019 6657 857 11835 14347 8699 9414 14401 1155 1018 5144 1815 139 856 6083 4698 2084 3576 2893 3139 3307 3091 2383 2152 3209 3012 3352 3288 2515 5005 5054 3636 ]
G [ 3532 3615 3405 3319 3440 3316 3349 3789 3062 4304 5099 4363 3783 2718 2719 2972 3396 4410 6848 1384 9632 949 69 437 109 39 338 5604 7943 866 14030 11423 1564 3157 4762 3732 3189 3687 4121 4465 5216 6123 3529 2263 2692 2975 4517 3633 2465 3316 ]
T [ 3883 3826 3817 3946 4109 3961 3766 3302 4724 3973 3394 3472 3851 3349 4411 2848 5030 2441 1892 5504 2618 671 139 1008 4947 148 12358 2316 1103 9779 381 1417 4214 3202 2130 3331 3920 3903 3727 3662 3123 2751 3461 2771 3840 5414 4089 2745 2897 3378 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.02 0.01 -0.04 0.02 -0.06 -0.04 -0.04 0.05 -0.06 -0.03 -0.06 -0.04 -0.01 -0.00 0.02 0.01 0.01 0.01 0.00 ]
C [ 0.01 0.02 -0.00 0.01 0.02 -0.01 0.03 0.10 -0.02 0.10 0.15 0.09 0.12 0.16 0.02 -0.02 0.04 0.07 -0.02 -0.03 0.04 0.04 -0.01 0.01 0.01 0.01 0.00 ]
G [ 0.01 0.00 0.00 0.01 0.02 0.03 0.04 -0.01 0.10 -0.03 -0.04 -0.01 -0.07 -0.01 -0.01 0.05 0.11 -0.02 0.16 0.11 -0.01 0.03 0.05 0.02 0.00 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.01 0.01 -0.01 -0.04 -0.05 -0.06 0.03 -0.06 0.09 -0.02 -0.02 0.04 -0.03 -0.01 0.02 -0.02 -0.02 0.00 0.01 0.01 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3357

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 238

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages