Detailed information of deep learning profile BP000334.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in breast epithelium using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000334.1
Cell line/tissue: breast epithelium
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR661NXJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.09 0.15 0.04 0.06 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.08 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 0.06 -0.00 0.16 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4015 3838 3976 4806 4575 4344 4191 4298 3561 4569 4453 3502 3621 3256 5063 6051 1946 7107 1751 995 1574 1451 160 6382 201 112 948 6574 469 2327 119 1134 3265 4174 6862 4792 5435 4443 4111 3955 4694 4378 5286 7660 5646 3453 4029 3965 4902 5031 ]
C [ 4268 4384 4620 3783 3646 4146 4418 4491 4466 2571 2400 3910 4407 6923 3610 4588 4923 1909 5239 7841 679 14219 16517 8891 9739 16614 1361 1240 5613 1999 125 1006 7065 5623 2374 4109 3210 3622 3739 3543 2858 2467 3733 3582 3889 3874 2874 5679 5887 4096 ]
G [ 4177 4172 3913 3767 3611 3732 3933 4594 3226 5344 6520 5455 4612 2978 3085 3234 3895 5412 8131 1019 12056 773 67 655 142 55 442 6349 9885 775 16327 13192 1731 3454 5298 4132 3711 4294 4650 5267 5792 6920 4020 2546 3112 3442 5286 4203 2801 3963 ]
T [ 4519 4585 4470 4623 5147 4757 4437 3596 5726 4495 3606 4112 4339 3822 5221 3106 6215 2551 1858 7124 2670 536 235 1051 6897 198 14228 2816 1012 11878 408 1647 4918 3728 2445 3946 4623 4620 4479 4214 3635 3214 3940 3191 4332 6210 4790 3132 3389 3889 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.04 -0.02 0.01 -0.04 0.03 -0.07 -0.04 -0.03 0.05 -0.05 -0.02 -0.07 -0.03 -0.01 -0.00 0.02 0.01 0.01 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.01 0.04 0.11 -0.02 0.11 0.15 0.09 0.12 0.16 0.02 -0.01 0.05 0.08 -0.01 -0.02 0.05 0.04 0.00 0.01 0.01 ]
G [ 0.01 0.00 0.01 0.01 0.02 0.04 0.05 -0.01 0.11 -0.03 -0.03 0.00 -0.05 -0.01 0.01 0.05 0.11 -0.02 0.17 0.11 -0.02 0.03 0.05 0.02 0.01 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.01 -0.00 -0.04 -0.04 -0.05 0.04 -0.04 0.08 -0.01 -0.02 0.03 -0.02 -0.01 0.02 -0.01 -0.02 -0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3190

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 169

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages