Detailed information of deep learning profile BP000340.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000340.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR676LDQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.18 -0.00 0.06 0.02 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.11 -0.00 0.04 0.01 0.00 0.00 -0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.07 0.06 0.19 0.13 -0.00 0.06 0.02 -0.00 0.01 0.00 -0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 0.00 ]

Frequency matrix

       
A [ 3893 5143 6406 4775 3873 4388 3931 4169 4702 4683 4935 5078 4358 2981 4394 5176 2194 828 12056 1652 3302 15385 371 7493 1315 330 506 2947 7882 1813 2871 6809 3348 5523 4297 4913 4356 4379 5131 6023 4180 4855 5146 5461 5060 4986 5031 5046 5004 4833 ]
C [ 5015 5712 4199 4094 3609 4803 7204 6334 5766 5360 4940 4592 5040 6375 4295 2448 13975 18015 1255 10037 7011 573 73 162 716 64 816 14049 1049 9628 6380 4566 4098 3738 3525 5007 6279 7095 5984 4094 5195 4546 4490 4452 4630 4668 4924 4854 4837 4950 ]
G [ 5925 3867 4600 4561 4349 4543 3398 3834 4426 4711 4535 4142 4905 3173 6133 8241 1594 286 3070 6938 1707 1917 18763 11497 11044 18777 16488 749 9321 5753 2129 5706 4974 4255 7979 5286 4920 3063 3307 5121 5252 5405 5091 4461 4525 5254 5158 5108 4994 5146 ]
T [ 4572 4683 4200 5975 7574 5671 4872 5068 4511 4651 4995 5593 5102 6876 4583 3540 1642 276 3024 778 7385 1530 198 253 6330 234 1595 1660 1153 2211 8025 2324 6985 5889 3604 4199 3850 4868 4983 4167 4778 4599 4678 5031 5190 4497 4292 4397 4570 4476 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 0.00 -0.02 -0.02 0.02 -0.00 -0.02 0.04 -0.02 -0.01 0.09 -0.04 0.07 -0.07 -0.04 -0.06 -0.01 0.03 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 0.01 ]
C [ 0.03 0.02 0.01 0.03 0.06 0.05 -0.01 0.12 0.19 -0.01 0.13 0.06 0.02 -0.02 -0.05 0.02 -0.05 -0.02 0.16 -0.01 0.08 0.06 0.04 0.02 0.01 0.01 0.02 0.03 ]
G [ 0.01 0.02 0.01 0.02 0.01 0.05 0.07 -0.02 -0.02 0.10 0.06 -0.01 0.03 0.19 0.14 0.11 0.19 0.15 -0.02 0.15 0.06 0.00 0.04 0.03 0.01 0.05 0.02 0.01 ]
T [ 0.00 0.00 0.01 0.00 0.02 -0.00 -0.01 -0.03 -0.07 -0.03 -0.05 0.07 -0.03 -0.04 -0.08 0.04 -0.04 0.02 -0.02 -0.06 -0.01 0.04 -0.04 0.03 0.01 -0.01 -0.00 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1382

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1165

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 906

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 745

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 525

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 312

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages