Detailed information of deep learning profile BP000339.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in LNCAP using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000339.1
Cell line/tissue: LNCAP
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR673WZL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.11 0.16 0.05 0.06 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.09 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 -0.00 0.17 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5560 5195 5438 6565 6276 5961 5726 5996 4929 6377 6108 4729 5053 4418 7226 8674 2613 10120 2380 1276 2157 1998 291 8918 193 153 1368 9074 795 3135 212 1724 4482 5817 9102 6549 7286 6209 5650 5533 6412 6252 7153 9937 7705 5041 5671 5555 6665 7044 ]
C [ 5394 5584 5639 4541 4433 5243 5650 5548 5423 3079 3034 5222 5459 8844 4246 5352 5867 1902 6276 10110 645 19082 21549 11463 12357 21727 1760 1559 7620 2518 226 1470 8867 6956 3114 4952 4133 4533 4669 4534 3784 3341 4581 4516 4649 4808 3718 6898 7203 5127 ]
G [ 5218 5234 4909 4781 4615 4551 4756 5639 4145 6739 8226 6788 5763 3816 3798 4019 5213 7033 11263 1052 16069 651 74 607 115 74 510 7827 12274 1040 21281 16594 2298 4322 6454 5329 4675 5272 5994 6418 7041 8117 5043 3324 3900 4271 6152 5218 3513 4739 ]
T [ 6073 6232 6259 6358 6921 6490 6113 5062 7748 6050 4877 5506 5970 5167 6975 4200 8552 3190 2326 9807 3374 514 331 1257 9580 291 18607 3785 1556 15552 526 2457 6598 5150 3575 5415 6151 6231 5932 5760 5008 4535 5468 4468 5991 8125 6704 4574 4864 5335 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.06 -0.03 0.01 -0.04 0.03 -0.07 -0.04 -0.03 0.06 -0.05 -0.02 -0.06 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.01 0.03 -0.00 0.02 0.03 -0.01 0.04 0.13 -0.03 0.13 0.17 0.10 0.13 0.18 0.02 -0.01 0.05 0.07 -0.03 -0.02 0.05 0.04 -0.00 0.01 0.01 0.01 0.00 ]
G [ 0.02 0.01 0.00 0.01 0.03 0.04 0.06 -0.03 0.13 -0.03 -0.04 -0.00 -0.06 -0.02 0.00 0.05 0.11 -0.02 0.17 0.11 -0.01 0.04 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.04 -0.04 -0.06 0.06 -0.05 0.09 -0.01 -0.02 0.04 -0.03 -0.00 0.02 -0.01 -0.02 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 544

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 236

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages