Detailed information of deep learning profile BP000395.1

  1. Home
  2. Deep Learning Profile > BP000395.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in right lobe of liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000395.1
Cell line/tissue: right lobe of liver
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR837OOH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.01 0.07 -0.00 0.02 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.17 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.09 -0.00 0.03 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.08 0.06 0.17 0.11 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4391 3976 3991 5010 6234 4804 3965 4440 3917 4169 4643 4811 4720 5001 4380 3161 4414 5260 2244 1153 11179 1850 3145 14898 380 6663 1749 496 747 3455 7210 2130 3166 6417 3494 5425 4224 4923 4393 4245 4893 5785 4235 4879 5201 5181 5126 5014 4879 4946 ]
C [ 4900 4121 5056 5985 4583 4395 3891 4952 7390 6716 6100 5511 5375 4956 5545 6732 4521 2610 14191 17845 1572 9713 7339 751 143 274 1043 228 1436 13289 1676 9666 6325 4791 4457 4118 3937 5237 6137 7067 6034 4502 5278 4843 4692 4891 4903 4940 5106 5136 ]
G [ 5165 6442 6310 4262 4876 4824 4641 4881 3634 4019 4566 4905 4820 4287 4966 3390 6267 8305 1893 482 3612 7443 2208 2490 19093 12591 10782 18700 15881 1138 9588 5523 2486 5925 5207 4473 8029 5510 5288 3696 3910 5306 5534 5545 5324 4863 4838 5412 5529 5243 ]
T [ 5396 5313 4495 4595 4159 5829 7355 5579 4911 4948 4543 4625 4937 5608 4961 6569 4650 3677 1524 372 3489 846 7160 1713 236 324 6278 428 1788 1970 1378 2533 7875 2719 6694 5836 3662 4182 4034 4844 5015 4259 4805 4585 4635 4917 4985 4486 4338 4527 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.04 0.04 -0.03 -0.03 0.09 -0.06 0.05 -0.07 -0.05 -0.06 -0.02 0.03 -0.03 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.00 0.02 0.05 0.03 -0.02 0.12 0.19 -0.02 0.12 0.06 -0.00 -0.03 -0.07 -0.01 -0.05 -0.03 0.13 -0.02 0.07 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.01 -0.01 0.04 0.06 -0.03 -0.03 0.07 0.05 -0.02 0.03 0.19 0.14 0.11 0.18 0.14 -0.02 0.13 0.04 -0.01 0.03 0.02 0.00 0.04 0.02 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.04 -0.08 -0.03 -0.06 0.06 -0.03 -0.05 -0.08 0.03 -0.04 0.01 -0.03 -0.07 -0.01 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 33

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages